ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GBLP_ORYSA (P49027) Guanine nucleotide-binding protein beta subu... 35 0.052
2RNFD_BUCAP (Q8KA19) Electron transport complex protein rnfD 28 6.3
3C5AR_MACMU (P79188) C5a anaphylatoxin chemotactic receptor (C5a-... 28 6.3

>GBLP_ORYSA (P49027) Guanine nucleotide-binding protein beta subunit-like|
           protein (GPB-LR) (RWD)
          Length = 334

 Score = 35.0 bits (79), Expect = 0.052
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = -3

Query: 237 TDGTIRIYKISGFSYS 190
           TDGTIRIYKISGFSY+
Sbjct: 318 TDGTIRIYKISGFSYA 333



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>RNFD_BUCAP (Q8KA19) Electron transport complex protein rnfD|
          Length = 349

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 213 KISGFSYSS*IMYLVLVASAPVKRLWYLLFFDCLEA*YLPWYL 85
           K S F YSS +  ++L  S P    W+++ F C  A  +  YL
Sbjct: 70  KNSLFDYSSFLTAVLLGLSTPCALPWWMIIFSCFFAIVISKYL 112



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>C5AR_MACMU (P79188) C5a anaphylatoxin chemotactic receptor (C5a-R) (C5aR)|
           (CD88 antigen) (Fragment)
          Length = 340

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -1

Query: 200 SATLARLCILF*WPLLR*NGCGIFFFLTVLRRNICLGTYA-*FTICVLAAVMISWIMHRL 24
           +  +ARL + F WPLL    C  F  L    R     T      + V+A+  I W+ +++
Sbjct: 194 AVAIARLVLGFVWPLLTLTMCYTFLLLRTWSRRATRSTKTLKVVVAVVASFFIFWLPYQV 253

Query: 23  LVLAVQY 3
             + + +
Sbjct: 254 TGMMMSF 260


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,124,384
Number of Sequences: 219361
Number of extensions: 440614
Number of successful extensions: 908
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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