ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_192099.1| Oryza sativa (japonica cultivar-group), predic... 46 0.050
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.050
3dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.050
4dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.050
5dbj|AK121587.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.050
6dbj|AK098893.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.050
7dbj|AK098877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.050
8dbj|AK060428.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.050
9dbj|D38231.1|RICGPBSLP Oryza sativa (japonica cultivar-group) RW... 46 0.050
10gb|AC147443.4| Gallus gallus BAC clone CH261-18C16 from chromoso... 46 0.050
11gb|AC104564.11| Homo sapiens chromosome 17, clone RP11-68I3, com... 42 0.78
12gb|AC023389.13| Homo sapiens chromosome 17, clone RP11-82O19, co... 42 0.78
13ref|XM_729184.1| Plasmodium chabaudi chabaudi Pc-fam-4 protein (... 40 3.1
14gb|U39645.1| Caenorhabditis elegans cosmid C14F11, complete sequ... 40 3.1
15emb|AL356107.21| Human DNA sequence from clone RP11-484D5 on chr... 40 3.1
16gb|AC099777.2| Homo sapiens chromosome 3 clone RP11-332H21, comp... 40 3.1
17gb|DP000031.1| Dasypus novemcinctus target 116 genomic scaffold 40 3.1

>ref|NM_192099.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1005

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 193 gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239
           ||||||||| || |||||||||||||| |  ||||||||||| ||||
Sbjct: 996 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 950



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 193      gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239
                ||||||||| || |||||||||||||| |  ||||||||||| ||||
Sbjct: 28326312 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 28326266



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>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0478H03
          Length = 167560

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                             
Query: 193    gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239
              ||||||||| || |||||||||||||| |  ||||||||||| ||||
Sbjct: 160819 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 160773



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>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0519D04
          Length = 193068

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 193   gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239
             ||||||||| || |||||||||||||| |  ||||||||||| ||||
Sbjct: 41412 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 41366



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>dbj|AK121587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037K24, full
            insert sequence
          Length = 1358

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 193  gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239
            ||||||||| || |||||||||||||| |  ||||||||||| ||||
Sbjct: 1094 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 1048



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>dbj|AK098893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001N15, full
            insert sequence
          Length = 1256

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 193  gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239
            ||||||||| || |||||||||||||| |  ||||||||||| ||||
Sbjct: 1065 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 1019



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>dbj|AK098877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E12, full
            insert sequence
          Length = 1326

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 193  gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239
            ||||||||| || |||||||||||||| |  ||||||||||| ||||
Sbjct: 1082 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 1036



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>dbj|AK060428.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-A02, full
            insert sequence
          Length = 1351

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 193  gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239
            ||||||||| || |||||||||||||| |  ||||||||||| ||||
Sbjct: 1088 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 1042



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>dbj|D38231.1|RICGPBSLP Oryza sativa (japonica cultivar-group) RWD mRNA for q group of
            receptor for activated C-kinase, complete cds
          Length = 1285

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 193  gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239
            ||||||||| || |||||||||||||| |  ||||||||||| ||||
Sbjct: 1022 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 976



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>gb|AC147443.4| Gallus gallus BAC clone CH261-18C16 from chromosome unknown, complete
             sequence
          Length = 205143

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 4     tattgaacagccaaaaccaacaa 26
             |||||||||||||||||||||||
Sbjct: 89542 tattgaacagccaaaaccaacaa 89564



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>gb|AC104564.11| Homo sapiens chromosome 17, clone RP11-68I3, complete sequence
          Length = 173058

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 7    tgaacagccaaaaccaacaaa 27
            |||||||||||||||||||||
Sbjct: 9921 tgaacagccaaaaccaacaaa 9941



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>gb|AC023389.13| Homo sapiens chromosome 17, clone RP11-82O19, complete sequence
          Length = 127918

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      tgaacagccaaaaccaacaaa 27
              |||||||||||||||||||||
Sbjct: 101483 tgaacagccaaaaccaacaaa 101503



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>ref|XM_729184.1| Plasmodium chabaudi chabaudi Pc-fam-4 protein (PC403777.00.0)
           partial mRNA
          Length = 643

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 161 gccactaaaacaagatacat 180
           ||||||||||||||||||||
Sbjct: 269 gccactaaaacaagatacat 288



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>gb|U39645.1| Caenorhabditis elegans cosmid C14F11, complete sequence
          Length = 40572

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    tatccatgagatcatgactg 55
             ||||||||||||||||||||
Sbjct: 11564 tatccatgagatcatgactg 11545



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>emb|AL356107.21| Human DNA sequence from clone RP11-484D5 on chromosome 13 Contains the
             gene for a novel protein similar to transforming growth
             factor beta-stimulated protein (TSC-22),  SMARCE1 (SWI/SNF
             related, matrix associated, actin dependent regulator of
             chromatin, subfamily e, member 1 ) pseudogene and a CpG
             island, complete sequence
          Length = 140499

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   taaaacaagatacataatct 185
             ||||||||||||||||||||
Sbjct: 59887 taaaacaagatacataatct 59906



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>gb|AC099777.2| Homo sapiens chromosome 3 clone RP11-332H21, complete sequence
          Length = 206537

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   ctagagtagctgaacccaga 207
             ||||||||||||||||||||
Sbjct: 58912 ctagagtagctgaacccaga 58893



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>gb|DP000031.1| Dasypus novemcinctus target 116 genomic scaffold
          Length = 288075

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 190  agagtagctgaacccagaga 209
            ||||||||||||||||||||
Sbjct: 4031 agagtagctgaacccagaga 4050


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,659,191
Number of Sequences: 3902068
Number of extensions: 1659191
Number of successful extensions: 28962
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28921
Number of HSP's gapped (non-prelim): 41
length of query: 239
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 217
effective length of database: 17,147,199,772
effective search space: 3720942350524
effective search space used: 3720942350524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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