Clone Name | rbastl18c10 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_192099.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1005 Score = 46.1 bits (23), Expect = 0.050 Identities = 41/47 (87%) Strand = Plus / Minus Query: 193 gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239 ||||||||| || |||||||||||||| | ||||||||||| |||| Sbjct: 996 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 950
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.050 Identities = 41/47 (87%) Strand = Plus / Minus Query: 193 gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239 ||||||||| || |||||||||||||| | ||||||||||| |||| Sbjct: 28326312 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 28326266
>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0478H03 Length = 167560 Score = 46.1 bits (23), Expect = 0.050 Identities = 41/47 (87%) Strand = Plus / Minus Query: 193 gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239 ||||||||| || |||||||||||||| | ||||||||||| |||| Sbjct: 160819 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 160773
>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0519D04 Length = 193068 Score = 46.1 bits (23), Expect = 0.050 Identities = 41/47 (87%) Strand = Plus / Minus Query: 193 gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239 ||||||||| || |||||||||||||| | ||||||||||| |||| Sbjct: 41412 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 41366
>dbj|AK121587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037K24, full insert sequence Length = 1358 Score = 46.1 bits (23), Expect = 0.050 Identities = 41/47 (87%) Strand = Plus / Minus Query: 193 gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239 ||||||||| || |||||||||||||| | ||||||||||| |||| Sbjct: 1094 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 1048
>dbj|AK098893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001N15, full insert sequence Length = 1256 Score = 46.1 bits (23), Expect = 0.050 Identities = 41/47 (87%) Strand = Plus / Minus Query: 193 gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239 ||||||||| || |||||||||||||| | ||||||||||| |||| Sbjct: 1065 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 1019
>dbj|AK098877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E12, full insert sequence Length = 1326 Score = 46.1 bits (23), Expect = 0.050 Identities = 41/47 (87%) Strand = Plus / Minus Query: 193 gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239 ||||||||| || |||||||||||||| | ||||||||||| |||| Sbjct: 1082 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 1036
>dbj|AK060428.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-A02, full insert sequence Length = 1351 Score = 46.1 bits (23), Expect = 0.050 Identities = 41/47 (87%) Strand = Plus / Minus Query: 193 gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239 ||||||||| || |||||||||||||| | ||||||||||| |||| Sbjct: 1088 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 1042
>dbj|D38231.1|RICGPBSLP Oryza sativa (japonica cultivar-group) RWD mRNA for q group of receptor for activated C-kinase, complete cds Length = 1285 Score = 46.1 bits (23), Expect = 0.050 Identities = 41/47 (87%) Strand = Plus / Minus Query: 193 gtagctgaacccagagatcttgtagatgcgaatggttccatcagtgt 239 ||||||||| || |||||||||||||| | ||||||||||| |||| Sbjct: 1022 gtagctgaaacctgagatcttgtagatcctgatggttccatctgtgt 976
>gb|AC147443.4| Gallus gallus BAC clone CH261-18C16 from chromosome unknown, complete sequence Length = 205143 Score = 46.1 bits (23), Expect = 0.050 Identities = 23/23 (100%) Strand = Plus / Plus Query: 4 tattgaacagccaaaaccaacaa 26 ||||||||||||||||||||||| Sbjct: 89542 tattgaacagccaaaaccaacaa 89564
>gb|AC104564.11| Homo sapiens chromosome 17, clone RP11-68I3, complete sequence Length = 173058 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 tgaacagccaaaaccaacaaa 27 ||||||||||||||||||||| Sbjct: 9921 tgaacagccaaaaccaacaaa 9941
>gb|AC023389.13| Homo sapiens chromosome 17, clone RP11-82O19, complete sequence Length = 127918 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 tgaacagccaaaaccaacaaa 27 ||||||||||||||||||||| Sbjct: 101483 tgaacagccaaaaccaacaaa 101503
>ref|XM_729184.1| Plasmodium chabaudi chabaudi Pc-fam-4 protein (PC403777.00.0) partial mRNA Length = 643 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 gccactaaaacaagatacat 180 |||||||||||||||||||| Sbjct: 269 gccactaaaacaagatacat 288
>gb|U39645.1| Caenorhabditis elegans cosmid C14F11, complete sequence Length = 40572 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 tatccatgagatcatgactg 55 |||||||||||||||||||| Sbjct: 11564 tatccatgagatcatgactg 11545
>emb|AL356107.21| Human DNA sequence from clone RP11-484D5 on chromosome 13 Contains the gene for a novel protein similar to transforming growth factor beta-stimulated protein (TSC-22), SMARCE1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 ) pseudogene and a CpG island, complete sequence Length = 140499 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 taaaacaagatacataatct 185 |||||||||||||||||||| Sbjct: 59887 taaaacaagatacataatct 59906
>gb|AC099777.2| Homo sapiens chromosome 3 clone RP11-332H21, complete sequence Length = 206537 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 ctagagtagctgaacccaga 207 |||||||||||||||||||| Sbjct: 58912 ctagagtagctgaacccaga 58893
>gb|DP000031.1| Dasypus novemcinctus target 116 genomic scaffold Length = 288075 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 agagtagctgaacccagaga 209 |||||||||||||||||||| Sbjct: 4031 agagtagctgaacccagaga 4050 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,659,191 Number of Sequences: 3902068 Number of extensions: 1659191 Number of successful extensions: 28962 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28921 Number of HSP's gapped (non-prelim): 41 length of query: 239 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 217 effective length of database: 17,147,199,772 effective search space: 3720942350524 effective search space used: 3720942350524 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)