ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT008960.1| Triticum aestivum clone wdk1c.pk012.i2:fis, full ... 168 6e-39
2gb|BT009560.1| Triticum aestivum clone wre1n.pk0001.h6:fis, full... 66 6e-08
3gb|AY111526.1| Zea mays CL881_3 mRNA sequence 58 2e-05
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
5dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
6dbj|AK121307.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
7dbj|AK064813.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
8dbj|AK061675.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
9emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4,... 48 0.015
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.015
11dbj|AK122078.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.015
12dbj|AK119248.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.015
13dbj|AK104539.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.015
14dbj|AK065274.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.015
15dbj|AK060907.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.015
16ref|NM_188086.1| Oryza sativa (japonica cultivar-group), Ozsa851... 46 0.058
17gb|BT018108.1| Zea mays clone EL01N0553E01.c mRNA sequence 46 0.058
18gb|AY104211.1| Zea mays PCO124720 mRNA sequence 46 0.058
19emb|AL928586.10| Mouse DNA sequence from clone RP23-353H5 on chr... 42 0.90
20dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
21dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
22gb|AC105109.10| Homo sapiens chromosome 15, clone CTD-2343P13, c... 40 3.6
23gb|AC104020.10| Homo sapiens chromosome 15, clone RP11-369K8, co... 40 3.6
24emb|BX511094.6| Zebrafish DNA sequence from clone CH211-137G12 i... 40 3.6 
>gb|BT008960.1| Triticum aestivum clone wdk1c.pk012.i2:fis, full insert mRNA sequence
          Length = 2815

 Score =  168 bits (85), Expect = 6e-39
 Identities = 139/156 (89%), Gaps = 7/156 (4%)
 Strand = Plus / Minus

                                                                        
Query: 125  aagcgcatcaccaaaagttggaacgcgcaagtgcgactagc------gctcagcagaaga 178
            ||||||||||||||||||||||||||||||||||| || ||      |||||||||||||
Sbjct: 2620 aagcgcatcaccaaaagttggaacgcgcaagtgcggctggctggctggctcagcagaaga 2561

                                                                        
Query: 179  acatgctgctgcggactttctcatggagacgaggcagctcctgcaccgggccgctggcag 238
            |||||||||||||||||||||||||||| ||||||||||||||||| ||  ||||| | |
Sbjct: 2560 acatgctgctgcggactttctcatggaggcgaggcagctcctgcactggagcgctgccgg 2501

                                                
Query: 239  tagaggtgtgg-caccaccctggctcgacgacgtct 273
             |||||||||| |||| |||||||||||||||||||
Sbjct: 2500 cagaggtgtggccaccgccctggctcgacgacgtct 2465



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 79/89 (88%), Gaps = 3/89 (3%)
 Strand = Plus / Minus

                                                                        
Query: 12   caaaggttctgaggcaccaaagtgtggcagcaagcttaggaacacaacatcccaggtgtc 71
            |||||||||||||||||||| |||  ||| | |||||||||||||||||||||||| |||
Sbjct: 2728 caaaggttctgaggcaccaa-gtgcagcaaccagcttaggaacacaacatcccaggagtc 2670

                                         
Query: 72   caacaggtcatcaaaggggccactactac 100
            ||||||| ||||| |  ||||||||||||
Sbjct: 2669 caacaggccatcaca--ggccactactac 2643
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>gb|BT009560.1| Triticum aestivum clone wre1n.pk0001.h6:fis, full insert mRNA
            sequence
          Length = 1565

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 88/105 (83%), Gaps = 1/105 (0%)
 Strand = Plus / Minus

                                                                        
Query: 168  tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 227
            ||||||||||||||||  ||| |  |||||||| || || |||||||||||| |||||||
Sbjct: 1171 tcagcagaagaacatggagctcctcactttctcgtgcagccgaggcagctccggcaccgg 1112

                                                         
Query: 228  gccgctggcagtagaggtgtgg-caccaccctggctcgacgacgt 271
            | ||||| | | ||| |||||| | || |||||||||||||||||
Sbjct: 1111 ggcgctgcccgcagacgtgtggccccctccctggctcgacgacgt 1067
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>gb|AY111526.1| Zea mays CL881_3 mRNA sequence
          Length = 628

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                       
Query: 166 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 225
           ||||||||||||||||||  ||| |  ||||||||||| ||||| ||||||||||| || 
Sbjct: 341 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 282

                    
Query: 226 gggccgctg 234
           ||| |||||
Sbjct: 281 gggacgctg 273
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 88/108 (81%), Gaps = 2/108 (1%)
 Strand = Plus / Plus

                                                                           
Query: 166     gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 225
               ||||||||||||||||||  ||| | |||||| | ||| || |||||||||||  |||||
Sbjct: 9630504 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 9630563

                                                               
Query: 226     gggccgctggcagtagaggtgtggcaccaccctggctcgacgacgtct 273
               ||  ||||| | |  ||||| |||  ||||| ||||||||||||||||
Sbjct: 9630564 ggagcgctgcccgccgaggtatgg--ccaccatggctcgacgacgtct 9630609



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 130      catcaccaaaagttggaacg 149
                ||||||||||||||||||||
Sbjct: 21143571 catcaccaaaagttggaacg 21143552
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>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0038F12
          Length = 190014

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 88/108 (81%), Gaps = 2/108 (1%)
 Strand = Plus / Plus

                                                                         
Query: 166   gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 225
             ||||||||||||||||||  ||| | |||||| | ||| || |||||||||||  |||||
Sbjct: 68507 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 68566

                                                             
Query: 226   gggccgctggcagtagaggtgtggcaccaccctggctcgacgacgtct 273
             ||  ||||| | |  ||||| |||  ||||| ||||||||||||||||
Sbjct: 68567 ggagcgctgcccgccgaggtatgg--ccaccatggctcgacgacgtct 68612
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>dbj|AK121307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111L20, full
            insert sequence
          Length = 3027

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 88/108 (81%), Gaps = 2/108 (1%)
 Strand = Plus / Minus

                                                                        
Query: 166  gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 225
            ||||||||||||||||||  ||| | |||||| | ||| || |||||||||||  |||||
Sbjct: 2865 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 2806

                                                            
Query: 226  gggccgctggcagtagaggtgtggcaccaccctggctcgacgacgtct 273
            ||  ||||| | |  ||||| |||  ||||| ||||||||||||||||
Sbjct: 2805 ggagcgctgcccgccgaggtatgg--ccaccatggctcgacgacgtct 2760
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>dbj|AK064813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E08, full
            insert sequence
          Length = 3047

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 88/108 (81%), Gaps = 2/108 (1%)
 Strand = Plus / Minus

                                                                        
Query: 166  gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 225
            ||||||||||||||||||  ||| | |||||| | ||| || |||||||||||  |||||
Sbjct: 2875 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 2816

                                                            
Query: 226  gggccgctggcagtagaggtgtggcaccaccctggctcgacgacgtct 273
            ||  ||||| | |  ||||| |||  ||||| ||||||||||||||||
Sbjct: 2815 ggagcgctgcccgccgaggtatgg--ccaccatggctcgacgacgtct 2770
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>dbj|AK061675.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H03, full
           insert sequence
          Length = 772

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 88/108 (81%), Gaps = 2/108 (1%)
 Strand = Plus / Minus

                                                                       
Query: 166 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 225
           ||||||||||||||||||  ||| | |||||| | ||| || |||||||||||  |||||
Sbjct: 574 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 515

                                                           
Query: 226 gggccgctggcagtagaggtgtggcaccaccctggctcgacgacgtct 273
           ||  ||||| | |  ||||| |||  ||||| ||||||||||||||||
Sbjct: 514 ggagcgctgcccgccgaggtatgg--ccaccatggctcgacgacgtct 469
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>emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A11,
              complete sequence
          Length = 127419

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                          
Query: 168    tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 227
              ||||||||| ||||||  ||| |  |||||||||||||| |||||||||||  |||||||
Sbjct: 121776 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 121835
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                           
Query: 168     tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 227
               ||||||||| ||||||  ||| |  |||||||||||||| |||||||||||  |||||||
Sbjct: 3532481 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 3532540
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>dbj|AK122078.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119H08, full
            insert sequence
          Length = 3385

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                        
Query: 168  tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 227
            ||||||||| ||||||  ||| |  |||||||||||||| |||||||||||  |||||||
Sbjct: 3037 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 2978
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>dbj|AK119248.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C06, full
            insert sequence
          Length = 1885

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                        
Query: 168  tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 227
            ||||||||| ||||||  ||| |  |||||||||||||| |||||||||||  |||||||
Sbjct: 1585 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 1526
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>dbj|AK104539.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H02, full
           insert sequence
          Length = 1196

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 168 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 227
           ||||||||| ||||||  ||| |  |||||||||||||| |||||||||||  |||||||
Sbjct: 896 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 837
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>dbj|AK065274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L10, full
            insert sequence
          Length = 3178

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                        
Query: 168  tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 227
            ||||||||| ||||||  ||| |  |||||||||||||| |||||||||||  |||||||
Sbjct: 2855 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 2796
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>dbj|AK060907.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F07, full
           insert sequence
          Length = 1196

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 168 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 227
           ||||||||| ||||||  ||| |  |||||||||||||| |||||||||||  |||||||
Sbjct: 896 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 837
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>ref|NM_188086.1| Oryza sativa (japonica cultivar-group), Ozsa8518 predicted mRNA
          Length = 2715

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 86/106 (81%), Gaps = 2/106 (1%)
 Strand = Plus / Minus

                                                                        
Query: 168  tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 227
            ||||||||||||||||  ||| | |||||| | ||| || |||||||||||  |||||||
Sbjct: 2715 tcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcaccgg 2656

                                                          
Query: 228  gccgctggcagtagaggtgtggcaccaccctggctcgacgacgtct 273
              ||||| | |  ||||| |||  ||||| ||||||||||||||||
Sbjct: 2655 agcgctgcccgccgaggtatgg--ccaccatggctcgacgacgtct 2612
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>gb|BT018108.1| Zea mays clone EL01N0553E01.c mRNA sequence
          Length = 1267

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                   
Query: 170  agcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcac 224
            ||||||||||||||  ||| | |||||| ||||| || |||||||||||| ||||
Sbjct: 1075 agcagaagaacatggagctcctgactttgtcatgcaggcgaggcagctccggcac 1021
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>gb|AY104211.1| Zea mays PCO124720 mRNA sequence
          Length = 2052

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                   
Query: 170  agcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcac 224
            ||||||||||||||  ||| | |||||| ||||| || |||||||||||| ||||
Sbjct: 1866 agcagaagaacatggagctcctgactttgtcatgcaggcgaggcagctccggcac 1812
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>emb|AL928586.10| Mouse DNA sequence from clone RP23-353H5 on chromosome 2, complete
             sequence
          Length = 105895

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 166   gctcagcagaagaacatgctgctgc 190
             |||||||||||||||||||| ||||
Sbjct: 94463 gctcagcagaagaacatgctcctgc 94487
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>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1144D11
          Length = 157943

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    catcaccaaaagttggaacg 149
              ||||||||||||||||||||
Sbjct: 111116 catcaccaaaagttggaacg 111097
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>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1064G04
          Length = 186704

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   catcaccaaaagttggaacg 149
             ||||||||||||||||||||
Sbjct: 41080 catcaccaaaagttggaacg 41061
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>gb|AC105109.10| Homo sapiens chromosome 15, clone CTD-2343P13, complete sequence
          Length = 76158

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 167   ctcagcagaagaacatgctgctgc 190
             |||| |||||||||||||||||||
Sbjct: 35520 ctcaccagaagaacatgctgctgc 35543
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>gb|AC104020.10| Homo sapiens chromosome 15, clone RP11-369K8, complete sequence
          Length = 171307

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 167    ctcagcagaagaacatgctgctgc 190
              |||| |||||||||||||||||||
Sbjct: 162327 ctcaccagaagaacatgctgctgc 162350
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>emb|BX511094.6| Zebrafish DNA sequence from clone CH211-137G12 in linkage group 19,
             complete sequence
          Length = 154360

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   gctcagcagaagaacatgct 185
             ||||||||||||||||||||
Sbjct: 97639 gctcagcagaagaacatgct 97620


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,955,744
Number of Sequences: 3902068
Number of extensions: 1955744
Number of successful extensions: 32346
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32281
Number of HSP's gapped (non-prelim): 56
length of query: 273
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 251
effective length of database: 17,147,199,772
effective search space: 4303947142772
effective search space used: 4303947142772
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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