>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 69      cagaggggagcctgtcaacgg 89
               |||||||||||||||||||||
Sbjct: 2835519 cagaggggagcctgtcaacgg 2835499

>gb|U58632.2|TNU58632 Thermotoga neapolitana xylan catabolic cluster and associated ABC
            transport system, complete sequence
          Length = 12298

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   cactatcttcgttctggaaa 43
            ||||||||||||||||||||
Sbjct: 6190 cactatcttcgttctggaaa 6171

>gb|AC083837.4| Homo sapiens chromosome 8, clone RP11-79H23, complete sequence
          Length = 166114

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 6    tgtataaaggaactcaaaca 25
            ||||||||||||||||||||
Sbjct: 9690 tgtataaaggaactcaaaca 9709

>gb|AC016031.6| Homo sapiens, clone RP11-12J8, complete sequence
          Length = 139690

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     tgtataaaggaactcaaaca 25
             ||||||||||||||||||||
Sbjct: 61125 tgtataaaggaactcaaaca 61106

>gb|AC121827.3| Mus musculus BAC clone RP23-476B3 from chromosome 7, complete sequence
          Length = 183470

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 64    caattcagaggggagcctg 82
             |||||||||||||||||||
Sbjct: 63947 caattcagaggggagcctg 63929

>gb|AC123543.3| Lemur catta clone LB2-212N12, complete sequence
          Length = 203201

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 40    gaaagatgggacacgagatgatgtcaa 66
             |||||||||||||  ||||||||||||
Sbjct: 71481 gaaagatgggacattagatgatgtcaa 71455

>emb|AL137020.13| Human DNA sequence from clone RP11-146B14 on chromosome 9 Contains part
             of the JMJD2C gene for jumonji domain containing 2C,
             complete sequence
          Length = 182231

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 11    aaaggaactcaaacactat 29
             |||||||||||||||||||
Sbjct: 52576 aaaggaactcaaacactat 52558

>emb|AL121946.20|HSDJ357H1 Human DNA sequence from clone RP3-357H1 on chromosome 6p12.1-12.3
              Contains part of the PKHD1 gene for polycystic kidney and
              hepatic disease 1 (autosomal recessive) (TIG multiple
              domains-1, FCYT, ARPKD) and a CpG island, complete sequence
          Length = 138961

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     taaaggaactcaaacacta 28
              |||||||||||||||||||
Sbjct: 113331 taaaggaactcaaacacta 113349

>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 54      gagatgatgtcaattcaga 72
               |||||||||||||||||||
Sbjct: 2057444 gagatgatgtcaattcaga 2057426

>emb|AL513412.3|HS403H13 Homo sapiens chromosome 9 BAC RP11-403H13, complete sequence
          Length = 191668

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 11     aaaggaactcaaacactat 29
              |||||||||||||||||||
Sbjct: 156155 aaaggaactcaaacactat 156137

>gb|AY129465.1| Homo sapiens polycystic kidney and hepatic disease 1 (PKHD1) gene,
              complete cds, alternatively spliced
          Length = 469514

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 10     taaaggaactcaaacacta 28
              |||||||||||||||||||
Sbjct: 136514 taaaggaactcaaacacta 136496

>gb|DP000004.1| Lemur catta target 1 genomic scaffold
          Length = 1399362

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 40      gaaagatgggacacgagatgatgtcaa 66
               |||||||||||||  ||||||||||||
Sbjct: 1076824 gaaagatgggacattagatgatgtcaa 1076798

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 9       ataaaggaactcaaacact 27
               |||||||||||||||||||
Sbjct: 9653159 ataaaggaactcaaacact 9653177

>emb|BX539312.7| Mouse DNA sequence from clone RP24-164C21 on chromosome 7, complete
             sequence
          Length = 123224

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 64    caattcagaggggagcctg 82
             |||||||||||||||||||
Sbjct: 63372 caattcagaggggagcctg 63390

>dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0706E03
          Length = 188028

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     ataaaggaactcaaacact 27
             |||||||||||||||||||
Sbjct: 93256 ataaaggaactcaaacact 93274

>dbj|AB251495.1| Physcomitrella patens mitochondrial DNA, complete genome
          Length = 105340

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 57    atgatgtcaattcagaggg 75
             |||||||||||||||||||
Sbjct: 70897 atgatgtcaattcagaggg 70915


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 691,491
Number of Sequences: 3902068
Number of extensions: 691491
Number of successful extensions: 54118
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54081
Number of HSP's gapped (non-prelim): 37
length of query: 89
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 68
effective length of database: 17,151,101,840
effective search space: 1166274925120
effective search space used: 1166274925120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)