ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZNF76_HUMAN (P36508) Zinc finger protein 76 29 3.2
2NOS3_BOVIN (P29473) Nitric-oxide synthase, endothelial (EC 1.14.... 28 4.2
3GP1D_CHLTR (P10555) Probable plasmid replicative DNA helicase (E... 28 4.2
4DHMH_PARDE (P29894) Methylamine dehydrogenase heavy chain precur... 28 5.5
5SEF1_YEAST (P34228) Suppressor protein SEF1 28 7.2
6PEPT_BACAN (Q81WU4) Peptidase T (EC 3.4.11.4) (Tripeptide aminop... 27 9.4
7CP52P_CANTR (P30612) Cytochrome P450 52C1 (EC 1.14.14.-) (CYPLII... 27 9.4

>ZNF76_HUMAN (P36508) Zinc finger protein 76|
          Length = 570

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 157 KKPYQCCILHCGQ*MKSYTSSSFRARTIAHLAAVQHVHCRPSSTNT 294
           +KPY C +  CG+    Y+S         +   V H HC+P + +T
Sbjct: 312 EKPYVCTVPGCGKRFTEYSS--------LYKHHVVHTHCKPYTCST 349



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>NOS3_BOVIN (P29473) Nitric-oxide synthase, endothelial (EC 1.14.13.39)|
           (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS)
           (eNOS) (Constitutive NOS) (cNOS)
          Length = 1204

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 199 MKSYTSSSFRARTIAHLAAVQHVHCRPSSTNTYHLK 306
           +  Y SS  R+ + AH   +Q V    +ST TYHL+
Sbjct: 132 INQYYSSIKRSGSQAHEERLQEVEAEVASTGTYHLR 167



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>GP1D_CHLTR (P10555) Probable plasmid replicative DNA helicase (EC 3.6.1.-)|
           (dnaB-like protein) (Virulence plasmid protein pGP1-D)
           (Protein P-3)
          Length = 451

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/39 (48%), Positives = 23/39 (58%)
 Frame = -3

Query: 280 LGDSGHVEQQQDVLLFWPGRRRKCSSSFIVHNVECSIGK 164
           L DSG +EQ  DV+LF     RK SSS    N E ++GK
Sbjct: 393 LRDSGQIEQDADVILF---INRKESSS----NCEITVGK 424



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>DHMH_PARDE (P29894) Methylamine dehydrogenase heavy chain precursor (EC|
           1.4.99.3) (MADH)
          Length = 417

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -2

Query: 335 WRR*RWQMITF-----RWYVLVELGRQWTC*TAARCAIVLARKEEE 213
           WR   WQ + +     R Y+LV+   +W   TA+R  +VL  K  E
Sbjct: 308 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRLLVVLDAKTGE 353



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>SEF1_YEAST (P34228) Suppressor protein SEF1|
          Length = 1057

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
 Frame = -3

Query: 295 TCWLSLGDSGHVEQQQDVLLFWPGRRRK----CSSSFI 194
           TCW+    S H+ Q   +L  WP   +K    CS  F+
Sbjct: 413 TCWIRTPRSTHISQALLILCIWPLPNQKVLDDCSYRFV 450



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>PEPT_BACAN (Q81WU4) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)|
           (Aminotripeptidase) (Tripeptidase)
          Length = 410

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +3

Query: 129 LTVILSYTGKETLPMLHSTL----WTMNEELHFLLLPGQ 233
           L     +TGK   P +H        T+NEEL+ +L P Q
Sbjct: 80  LDTATDFTGKNVKPQIHENFDGNAITLNEELNIVLTPEQ 118



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>CP52P_CANTR (P30612) Cytochrome P450 52C1 (EC 1.14.14.-) (CYPLIIC1)|
           (Alkane-inducible P450-ALK7)
          Length = 505

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 49  QCMNHEYTLDYRTDLVVGSRHSSLK 123
           Q + H +T+DY TD ++G    SLK
Sbjct: 179 QTLAHLFTIDYSTDFLLGESCDSLK 203


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,791,663
Number of Sequences: 219361
Number of extensions: 842819
Number of successful extensions: 1586
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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