ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Z30243.1|SCCLHSP S.cereale (Halo) chloroplast mRNA for heat-... 141 3e-31
2gb|AY324231.1| Rana catesbeiana androgen receptor mRNA, complete... 38 2.9

>emb|Z30243.1|SCCLHSP S.cereale (Halo) chloroplast mRNA for heat-shock protein
          Length = 2654

 Score =  141 bits (71), Expect = 3e-31
 Identities = 71/71 (100%)
 Strand = Plus / Minus

                                                                        
Query: 2    aatggatgcctacagaactaactaatctctccatgggtcattctcgttctcagtcctgac 61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2468 aatggatgcctacagaactaactaatctctccatgggtcattctcgttctcagtcctgac 2409

                       
Query: 62   ttcggatggct 72
            |||||||||||
Sbjct: 2408 ttcggatggct 2398



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>gb|AY324231.1| Rana catesbeiana androgen receptor mRNA, complete cds
          Length = 3391

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 31   tccatgggtcattctcgttctca 53
            ||||||||||||||||| |||||
Sbjct: 1700 tccatgggtcattctcggtctca 1678


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 439,560
Number of Sequences: 3902068
Number of extensions: 439560
Number of successful extensions: 42390
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42388
Number of HSP's gapped (non-prelim): 2
length of query: 72
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 51
effective length of database: 17,151,101,840
effective search space: 874706193840
effective search space used: 874706193840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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