ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 246 5e-62
2dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic D... 246 5e-62
3dbj|AK065611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 246 5e-62
4ref|XM_849931.1| PREDICTED: Canis familiaris similar to G2/mitot... 42 1.5
5emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.5
6emb|BX640424.1| Bordetella parapertussis strain 12822, complete ... 42 1.5
7emb|BX511157.10| Zebrafish DNA sequence from clone DKEY-197M14 i... 42 1.5
8ref|NM_118341.2| Arabidopsis thaliana unknown protein AT4G22190 ... 40 6.0
9ref|XM_675903.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 6.0
10emb|CR956354.1| Wallaby DNA sequence from clone GRWB-143H14, com... 40 6.0
11emb|AL161556.2|ATCHRIV56 Arabidopsis thaliana DNA chromosome 4, ... 40 6.0
12emb|AL021712.2|ATT10I14 Arabidopsis thaliana DNA chromosome 4, B... 40 6.0
13gb|AY128854.1| Arabidopsis thaliana unknown protein (At4g22190) ... 40 6.0
14gb|AY099607.1| Arabidopsis thaliana unknown protein (At4g22190) ... 40 6.0
15gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 40 6.0
16gb|AC124042.3| Oryctolagus cuniculus clone LB1-56H19, complete s... 40 6.0
17emb|BX827348.1|CNS0A482 Arabidopsis thaliana Full-length cDNA Co... 40 6.0
18emb|BX827595.1|CNS0A3MF Arabidopsis thaliana Full-length cDNA Co... 40 6.0
19gb|AY089185.1| Arabidopsis thaliana clone 6848 mRNA, complete se... 40 6.0
20dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.0
21gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.0
22dbj|AB055862.1| Procambarus clarkii mRNA for Kettin, complete cds 40 6.0
23dbj|AB055861.1| Procambarus clarkii I-con mRNA for I-connectin, ... 40 6.0 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  246 bits (124), Expect = 5e-62
 Identities = 190/212 (89%)
 Strand = Plus / Plus

                                                                            
Query: 170      ccggcggggcgaggttgagcaccatgtcgggccccttctccccggcgacggagaactcgt 229
                ||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 29000693 ccggcggcgcgaggttgagcaccatgtcggggcccttgtcgccggcgacggagaactcgt 29000752

                                                                            
Query: 230      cgggcaccggcacgcccagctcctcacacactaaccgcaccacgcgccgcgtgacggacc 289
                ||||||||||||||||||||||||| ||||| | ||| |||||||||||||| |||   |
Sbjct: 29000753 cgggcaccggcacgcccagctcctcgcacaccagccggaccacgcgccgcgtcacgccgc 29000812

                                                                            
Query: 290      ccagcgccatcttgttcaccgtcacggcgatggcgaacccgtgctccgggtcgcagaacc 349
                |||||| ||||||||||||||||||||| ||||| | ||||||||||  |||||||||||
Sbjct: 29000813 ccagcgacatcttgttcaccgtcacggccatggccagcccgtgctccacgtcgcagaacc 29000872

                                                
Query: 350      cgttcgacccgcccatccctgagtggccgaac 381
                |  |||||||||||||||| ||||| ||||||
Sbjct: 29000873 ccgtcgacccgcccatcccggagtgcccgaac 29000904



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                           
Query: 405      gccgtacctcctgaacccgagcccgaacttgccgttcgggtgg 447
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29000943 gccgtacctcctgaacccgagcccgaacttgccgttcgggtgg 29000985
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>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0596H10
          Length = 166570

 Score =  246 bits (124), Expect = 5e-62
 Identities = 190/212 (89%)
 Strand = Plus / Plus

                                                                         
Query: 170   ccggcggggcgaggttgagcaccatgtcgggccccttctccccggcgacggagaactcgt 229
             ||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 15680 ccggcggcgcgaggttgagcaccatgtcggggcccttgtcgccggcgacggagaactcgt 15739

                                                                         
Query: 230   cgggcaccggcacgcccagctcctcacacactaaccgcaccacgcgccgcgtgacggacc 289
             ||||||||||||||||||||||||| ||||| | ||| |||||||||||||| |||   |
Sbjct: 15740 cgggcaccggcacgcccagctcctcgcacaccagccggaccacgcgccgcgtcacgccgc 15799

                                                                         
Query: 290   ccagcgccatcttgttcaccgtcacggcgatggcgaacccgtgctccgggtcgcagaacc 349
             |||||| ||||||||||||||||||||| ||||| | ||||||||||  |||||||||||
Sbjct: 15800 ccagcgacatcttgttcaccgtcacggccatggccagcccgtgctccacgtcgcagaacc 15859

                                             
Query: 350   cgttcgacccgcccatccctgagtggccgaac 381
             |  |||||||||||||||| ||||| ||||||
Sbjct: 15860 ccgtcgacccgcccatcccggagtgcccgaac 15891



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                        
Query: 405   gccgtacctcctgaacccgagcccgaacttgccgttcgggtgg 447
             |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15930 gccgtacctcctgaacccgagcccgaacttgccgttcgggtgg 15972
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>dbj|AK065611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029I23, full
            insert sequence
          Length = 2957

 Score =  246 bits (124), Expect = 5e-62
 Identities = 190/212 (89%)
 Strand = Plus / Minus

                                                                        
Query: 170  ccggcggggcgaggttgagcaccatgtcgggccccttctccccggcgacggagaactcgt 229
            ||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 2650 ccggcggcgcgaggttgagcaccatgtcggggcccttgtcgccggcgacggagaactcgt 2591

                                                                        
Query: 230  cgggcaccggcacgcccagctcctcacacactaaccgcaccacgcgccgcgtgacggacc 289
            ||||||||||||||||||||||||| ||||| | ||| |||||||||||||| |||   |
Sbjct: 2590 cgggcaccggcacgcccagctcctcgcacaccagccggaccacgcgccgcgtcacgccgc 2531

                                                                        
Query: 290  ccagcgccatcttgttcaccgtcacggcgatggcgaacccgtgctccgggtcgcagaacc 349
            |||||| ||||||||||||||||||||| ||||| | ||||||||||  |||||||||||
Sbjct: 2530 ccagcgacatcttgttcaccgtcacggccatggccagcccgtgctccacgtcgcagaacc 2471

                                            
Query: 350  cgttcgacccgcccatccctgagtggccgaac 381
            |  |||||||||||||||| ||||| ||||||
Sbjct: 2470 ccgtcgacccgcccatcccggagtgcccgaac 2439



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                       
Query: 405  gccgtacctcctgaacccgagcccgaacttgccgttcgggtgg 447
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2400 gccgtacctcctgaacccgagcccgaacttgccgttcgggtgg 2358
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>ref|XM_849931.1| PREDICTED: Canis familiaris similar to G2/mitotic-specific cyclin
           B1 (LOC489180), mRNA
          Length = 929

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 7   catcattcacatcaagaattacatc 31
           |||||||||| ||||||||||||||
Sbjct: 105 catcattcacctcaagaattacatc 81
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>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16
          Length = 347786

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 222    gaactcgtcgggcaccggcacgcccagct 250
              |||| |||||| |||||||||||||||||
Sbjct: 105702 gaacacgtcggtcaccggcacgcccagct 105730
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>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14
          Length = 349146

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 222    gaactcgtcgggcaccggcacgcccagct 250
              |||| |||||| |||||||||||||||||
Sbjct: 109683 gaacacgtcggtcaccggcacgcccagct 109711
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>emb|BX511157.10| Zebrafish DNA sequence from clone DKEY-197M14 in linkage group 5,
             complete sequence
          Length = 159528

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 53    tgaagttttacagtgtaaaaa 73
             |||||||||||||||||||||
Sbjct: 11082 tgaagttttacagtgtaaaaa 11062
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>ref|NM_118341.2| Arabidopsis thaliana unknown protein AT4G22190 mRNA, complete cds
          Length = 1464

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 412 ctcctgaacccgagcccgaacttg 435
           ||||||||||||| ||||||||||
Sbjct: 681 ctcctgaacccgaacccgaacttg 658
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>ref|XM_675903.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7726.2), mRNA
          Length = 3714

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  tgccgtgcctttcaaattcc 147
            ||||||||||||||||||||
Sbjct: 2280 tgccgtgcctttcaaattcc 2299
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>emb|CR956354.1| Wallaby DNA sequence from clone GRWB-143H14, complete sequence
          Length = 120769

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   ccagcgccatcttgttcacc 309
             ||||||||||||||||||||
Sbjct: 47547 ccagcgccatcttgttcacc 47566
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>emb|AL161556.2|ATCHRIV56 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 56
          Length = 196247

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 412    ctcctgaacccgagcccgaacttg 435
              ||||||||||||| ||||||||||
Sbjct: 170592 ctcctgaacccgaacccgaacttg 170615
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>emb|AL021712.2|ATT10I14 Arabidopsis thaliana DNA chromosome 4, BAC clone T10I14 (ESSA project)
          Length = 82891

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 412   ctcctgaacccgagcccgaacttg 435
             ||||||||||||| ||||||||||
Sbjct: 13250 ctcctgaacccgaacccgaacttg 13273
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>gb|AY128854.1| Arabidopsis thaliana unknown protein (At4g22190) mRNA, complete cds
          Length = 1232

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 412 ctcctgaacccgagcccgaacttg 435
           ||||||||||||| ||||||||||
Sbjct: 628 ctcctgaacccgaacccgaacttg 605
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>gb|AY099607.1| Arabidopsis thaliana unknown protein (At4g22190) mRNA, complete cds
          Length = 1294

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 412 ctcctgaacccgagcccgaacttg 435
           ||||||||||||| ||||||||||
Sbjct: 681 ctcctgaacccgaacccgaacttg 658
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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 290     ccagcgccatcttgttcacc 309
               ||||||||||||||||||||
Sbjct: 1019017 ccagcgccatcttgttcacc 1019036
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>gb|AC124042.3| Oryctolagus cuniculus clone LB1-56H19, complete sequence
          Length = 194657

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   ccagcgccatcttgttcacc 309
             ||||||||||||||||||||
Sbjct: 16067 ccagcgccatcttgttcacc 16086
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>emb|BX827348.1|CNS0A482 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS43ZA07 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1272

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 412 ctcctgaacccgagcccgaacttg 435
           ||||||||||||| ||||||||||
Sbjct: 499 ctcctgaacccgaacccgaacttg 476
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>emb|BX827595.1|CNS0A3MF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS80ZD05 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1276

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 412 ctcctgaacccgagcccgaacttg 435
           ||||||||||||| ||||||||||
Sbjct: 514 ctcctgaacccgaacccgaacttg 491
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>gb|AY089185.1| Arabidopsis thaliana clone 6848 mRNA, complete sequence
          Length = 1158

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 412 ctcctgaacccgagcccgaacttg 435
           ||||||||||||| ||||||||||
Sbjct: 514 ctcctgaacccgaacccgaacttg 491
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 227     cgtcgggcaccggcacgccc 246
               ||||||||||||||||||||
Sbjct: 2756643 cgtcgggcaccggcacgccc 2756662
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 349     ccgttcgacccgcccatccc 368
               ||||||||||||||||||||
Sbjct: 4237343 ccgttcgacccgcccatccc 4237324
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>dbj|AB055862.1| Procambarus clarkii mRNA for Kettin, complete cds
          Length = 16076

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 414  cctgaacccgagcccgaact 433
            ||||||||||||||||||||
Sbjct: 2042 cctgaacccgagcccgaact 2061
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>dbj|AB055861.1| Procambarus clarkii I-con mRNA for I-connectin, complete cds
          Length = 53424

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 414  cctgaacccgagcccgaact 433
            ||||||||||||||||||||
Sbjct: 2042 cctgaacccgagcccgaact 2061


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,987,766
Number of Sequences: 3902068
Number of extensions: 2987766
Number of successful extensions: 64188
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63822
Number of HSP's gapped (non-prelim): 366
length of query: 447
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 425
effective length of database: 17,147,199,772
effective search space: 7287559903100
effective search space used: 7287559903100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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