ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1URED_SYNY3 (P73047) Urease accessory protein ureD 28 7.0
2Y1356_MYCBO (P64806) Hypothetical protein Mb1356 28 9.2
3Y1322_MYCTU (P64805) Hypothetical protein Rv1322/MT1363.1 28 9.2

>URED_SYNY3 (P73047) Urease accessory protein ureD|
          Length = 270

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 123 ASVDERRQWHAQSWFRYESFGHRAKLSRELI*KLSKKERLY 1
           ++V+    W A  W RY+  GHR ++   L+    K +R +
Sbjct: 5   STVNPSAPWQANLWLRYDRPGHRTRMVECLVQAPLKVQRSF 45



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>Y1356_MYCBO (P64806) Hypothetical protein Mb1356|
          Length = 98

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 129 PPASVDERRQWHAQSW 82
           P A VD+RR WH   W
Sbjct: 70  PQAGVDDRRHWHTPCW 85



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>Y1322_MYCTU (P64805) Hypothetical protein Rv1322/MT1363.1|
          Length = 98

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 129 PPASVDERRQWHAQSW 82
           P A VD+RR WH   W
Sbjct: 70  PQAGVDDRRHWHTPCW 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,905,467
Number of Sequences: 219361
Number of extensions: 194126
Number of successful extensions: 543
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 80,573,946
effective HSP length: 20
effective length of database: 76,186,726
effective search space used: 1828481424
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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