ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl18a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ENP2_HUMAN (Q9Y5L3) Ectonucleoside triphosphate diphosphohydrola... 29 3.1
2Y1276_MYCTU (Q11043) Hypothetical protein Rv1276c/MT1313 28 4.1
3CARB_CLOAB (Q97FT3) Carbamoyl-phosphate synthase large chain (EC... 28 4.1
4DRS1_GIBZE (Q4I830) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-) 28 5.3
5BPHF_BURCE (P37332) Biphenyl dioxygenase system ferredoxin subunit 27 9.0

>ENP2_HUMAN (Q9Y5L3) Ectonucleoside triphosphate diphosphohydrolase 2 (EC|
           3.6.1.-) (NTPDase2) (Ecto-ATPase) (CD39 antigen-like 1)
          Length = 495

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -3

Query: 294 LLGKNYITPCKLQV---DCHAATLTRLSGVNLDHVC*QK*SGLWSFPRMYC*TCLFPCLF 124
           LLG  Y +PC +     + +++    LSG +  H+C    SGL+SF       C F  +F
Sbjct: 275 LLGDVYQSPCTMAQRPQNFNSSARVSLSGSSDPHLCRDLVSGLFSFSSCPFSRCSFNGVF 334

Query: 123 YP 118
            P
Sbjct: 335 QP 336



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>Y1276_MYCTU (Q11043) Hypothetical protein Rv1276c/MT1313|
          Length = 158

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 237 WQHGNRPGVCTVLCSSSPKASRV*FHTG 320
           W   N P V  VLCS++ +A +   HTG
Sbjct: 33  WLRANLPAVDAVLCSTATRARQTLAHTG 60



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>CARB_CLOAB (Q97FT3) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1065

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 66  CTHGTWMVEEAGYMQCYL*TSP 1
           C HG W ++EAGY    +  +P
Sbjct: 576 CVHGVWAIKEAGYKSIIINNNP 597



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>DRS1_GIBZE (Q4I830) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)|
          Length = 796

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
 Frame = +3

Query: 36  LLQPSRFHAYNDYRALATLVIRCIRSKGGKKDKETSTFSSTSLEMTKAQIIFVNKHGLS* 215
           L +P+R    +  + + TLV   +R + G++DK     +     + K ++I   +     
Sbjct: 455 LNRPARVMVNSQKKTVTTLVQEFVRLRPGREDKRMGYLAHVCKNLYKERVIIFFRQKKDA 514

Query: 216 HRST*LMWQHGNRPGVCTVLCSSSPKASRV*FHTG*RSRED-RDGCALWLLA 368
           HR+  +    G     C  L  S  +  R+       S ED RDG   +LLA
Sbjct: 515 HRARIIFGLLGLS---CAELHGSMNQTQRI------SSVEDFRDGKVAYLLA 557



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>BPHF_BURCE (P37332) Biphenyl dioxygenase system ferredoxin subunit|
          Length = 109

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 90  ELQVLCSHCTHGTWMVEEAGYMQ 22
           EL      CTHG W + + GY++
Sbjct: 35  ELFATQDRCTHGDWSLSDGGYLE 57


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,567,279
Number of Sequences: 219361
Number of extensions: 1099466
Number of successful extensions: 2391
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2391
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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