Clone Name | rbastl18a03 |
---|---|
Clone Library Name | barley_pub |
>emb|CT573098.3| RP43-076G03, complete sequence Length = 175456 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 162 ttggaaatgaccaaagcccagattat 187 ||||||||||| |||||||||||||| Sbjct: 153912 ttggaaatgactaaagcccagattat 153887
>emb|CT573270.1| RP43-049F09, complete sequence Length = 165723 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 162 ttggaaatgaccaaagcccagattat 187 ||||||||||| |||||||||||||| Sbjct: 65874 ttggaaatgactaaagcccagattat 65849
>gb|AC120003.6| Mus musculus chromosome 8, clone RP24-148H22, complete sequence Length = 210466 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 aaagggggtaaaaaagacaag 134 ||||||||||||||||||||| Sbjct: 21247 aaagggggtaaaaaagacaag 21267
>gb|AC115484.2| Drosophila melanogaster clone BACR06K01, complete sequence Length = 168504 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 atttttgtcaacaaacatggtctaa 210 |||||||||||| |||||||||||| Sbjct: 13623 atttttgtcaaccaacatggtctaa 13647
>emb|AL160154.11| Human DNA sequence from clone RP11-447N10 on chromosome 13 Contains a CpG island, complete sequence Length = 157379 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 tcataaatagcattgcatata 30 ||||||||||||||||||||| Sbjct: 152859 tcataaatagcattgcatata 152839
>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research Institute) complete sequence Length = 228052 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 269 ggtgttatgtagttcttcccc 289 ||||||||||||||||||||| Sbjct: 173013 ggtgttatgtagttcttcccc 172993
>ref|NM_080191.2| Drosophila melanogaster weckle CG4148-RA (wek), mRNA Length = 1659 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 186 atttttgtcaacaaacatggtctaa 210 |||||||||||| |||||||||||| Sbjct: 1520 atttttgtcaaccaacatggtctaa 1496
>gb|AY051673.1| Drosophila melanogaster LD22579 full length cDNA Length = 1677 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 186 atttttgtcaacaaacatggtctaa 210 |||||||||||| |||||||||||| Sbjct: 1520 atttttgtcaaccaacatggtctaa 1496
>gb|AE003648.2| Drosophila melanogaster chromosome 2L, section 57 of 83 of the complete sequence Length = 284900 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 atttttgtcaacaaacatggtctaa 210 |||||||||||| |||||||||||| Sbjct: 239157 atttttgtcaaccaacatggtctaa 239181
>gb|DQ452367.1| Liriomyza huidobrensis clone 3 heat shock protein Hsp40 (Hsp40) mRNA, partial cds Length = 1081 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ggtaaaaaagacaaggaaac 139 |||||||||||||||||||| Sbjct: 992 ggtaaaaaagacaaggaaac 1011
>gb|DQ452366.1| Liriomyza huidobrensis clone 2 heat shock protein Hsp40 (Hsp40) mRNA, partial cds Length = 1325 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ggtaaaaaagacaaggaaac 139 |||||||||||||||||||| Sbjct: 993 ggtaaaaaagacaaggaaac 1012
>emb|AL356605.20| Human DNA sequence from clone RP11-414G18 on chromosome 6 Contains part of the TCBA1 gene for T-cell lymphoma breakpoint associated target 1, complete sequence Length = 169493 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 attatttttgtcaacaaaca 202 |||||||||||||||||||| Sbjct: 68459 attatttttgtcaacaaaca 68478
>emb|BX649410.18| Mouse DNA sequence from clone RP23-168C6 on chromosome 4 Contains a ribosomal protein S6 (Rps6) pseudogene and a novel gene, complete sequence Length = 231582 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 gttccacactgggtaaaggt 327 |||||||||||||||||||| Sbjct: 81134 gttccacactgggtaaaggt 81153
>gb|AC093886.2| Homo sapiens BAC clone RP11-666L21 from 4, complete sequence Length = 174332 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 taaaaaagacaaggaaacaa 141 |||||||||||||||||||| Sbjct: 148456 taaaaaagacaaggaaacaa 148437
>gb|AC007467.4|AC007467 Drosophila melanogaster, chromosome 2L, region 38E-38F, BAC clone BACR07D17, complete sequence Length = 173422 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 91 ttgtcatcagatgtattcgctcaaaagg 118 ||||||||||| ||||||||||||||| Sbjct: 77353 ttgtcatcagacctattcgctcaaaagg 77326
>gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, complete sequence Length = 163855 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 ttggaaatgaccaaagccca 181 |||||||||||||||||||| Sbjct: 103554 ttggaaatgaccaaagccca 103573
>emb|AL929213.5| Zebrafish DNA sequence from clone CH211-144A19, complete sequence Length = 169897 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 tatttttgtcaacaaacatg 204 |||||||||||||||||||| Sbjct: 78890 tatttttgtcaacaaacatg 78909
>emb|AL391703.9| Human DNA sequence from clone RP11-422P8 on chromosome 1 Contains the 5' end of the GNG12 gene for guanine nucleotide binding protein (G protein), gamma 12, the 5' end of a novel gene (FLJ38762, FLJ42034) and a CpG island, complete sequence Length = 191741 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 caaggaaacaagcacgtttagcag 154 ||||||||||||||||||| |||| Sbjct: 98968 caaggaaacaagcacgttttgcag 98945
>gb|AE003668.5| Drosophila melanogaster chromosome 2L, section 77 of 83 of the complete sequence Length = 270158 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 91 ttgtcatcagatgtattcgctcaaaagg 118 ||||||||||| ||||||||||||||| Sbjct: 67167 ttgtcatcagacctattcgctcaaaagg 67140
>gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s DS04217 (D56) and DS00582 (D85)), complete sequence Length = 142799 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 91 ttgtcatcagatgtattcgctcaaaagg 118 ||||||||||| ||||||||||||||| Sbjct: 12184 ttgtcatcagacctattcgctcaaaagg 12211
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ataaatagcattgcatatag 31 |||||||||||||||||||| Sbjct: 2819035 ataaatagcattgcatatag 2819054 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,331,784 Number of Sequences: 3902068 Number of extensions: 3331784 Number of successful extensions: 83508 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83460 Number of HSP's gapped (non-prelim): 48 length of query: 392 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 370 effective length of database: 17,147,199,772 effective search space: 6344463915640 effective search space used: 6344463915640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)