Clone Name | rbastl18a01 |
---|---|
Clone Library Name | barley_pub |
>gb|AC026179.5|AC026179 Homo sapiens chromosome 3 clone RP11-264H3 map 3p, complete sequence Length = 166488 Score = 42.1 bits (21), Expect = 0.32 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 atgtacttactttacatggat 56 ||||||||||||||||||||| Sbjct: 152625 atgtacttactttacatggat 152605
>gb|AC066584.6|AC066584 Homo sapiens chromosome 3 clone RP11-244G3 map 3p, complete sequence Length = 155825 Score = 42.1 bits (21), Expect = 0.32 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 atgtacttactttacatggat 56 ||||||||||||||||||||| Sbjct: 76775 atgtacttactttacatggat 76755
>gb|AC018493.6|AC018493 Homo sapiens chromosome 3 clone RP11-163M22 map 3p, complete sequence Length = 180299 Score = 42.1 bits (21), Expect = 0.32 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 atgtacttactttacatggat 56 ||||||||||||||||||||| Sbjct: 171146 atgtacttactttacatggat 171166
>gb|AC011327.17|AC011327 Homo sapiens 3 BAC RP11-77I5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168812 Score = 42.1 bits (21), Expect = 0.32 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 atgtacttactttacatggat 56 ||||||||||||||||||||| Sbjct: 159653 atgtacttactttacatggat 159673
>emb|AL935264.12| Mouse DNA sequence from clone RP23-118A9 on chromosome 4, complete sequence Length = 230886 Score = 42.1 bits (21), Expect = 0.32 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 ctgcactttattggggatgta 40 ||||||||||||||||||||| Sbjct: 26959 ctgcactttattggggatgta 26939
>gb|AC023485.6| Homo sapiens chromosome 3 clone RP11-489D19 map 3p, complete sequence Length = 179304 Score = 42.1 bits (21), Expect = 0.32 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 atgtacttactttacatggat 56 ||||||||||||||||||||| Sbjct: 100248 atgtacttactttacatggat 100228
>gb|AY633104.1| Cicurina pallida haplotype TX365 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 984 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 tactttacatggatcttatt 62 |||||||||||||||||||| Sbjct: 678 tactttacatggatcttatt 697
>gb|AY633103.1| Cicurina pallida haplotype TX363 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 966 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 tactttacatggatcttatt 62 |||||||||||||||||||| Sbjct: 660 tactttacatggatcttatt 679
>gb|AC135239.3| Mus musculus BAC clone RP23-324D2 from chromosome 3, complete sequence Length = 190178 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 gcactttattggggatgtacttac 45 |||||| ||||||||||||||||| Sbjct: 91501 gcacttaattggggatgtacttac 91524
>gb|AC163212.3| Mus musculus chromosome 3, clone RP24-102O2, complete sequence Length = 199319 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 gcactttattggggatgtacttac 45 |||||| ||||||||||||||||| Sbjct: 61943 gcacttaattggggatgtacttac 61966
>gb|DQ174430.1| Diaea sp. JEG-696 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 820 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 tactttacatggatcttatt 62 |||||||||||||||||||| Sbjct: 774 tactttacatggatcttatt 793
>gb|DQ174429.1| Diaea sp. JEG-697 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 820 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 tactttacatggatcttatt 62 |||||||||||||||||||| Sbjct: 774 tactttacatggatcttatt 793
>gb|DQ174399.1| Diaea sp. JEG-692 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 820 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 tactttacatggatcttatt 62 |||||||||||||||||||| Sbjct: 774 tactttacatggatcttatt 793
>gb|DQ174374.1| Misumenops melloleitaio isolate 368 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 820 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 tactttacatggatcttatt 62 |||||||||||||||||||| Sbjct: 774 tactttacatggatcttatt 793
>gb|DQ174373.1| Misumenops melloleitaio isolate 484 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 819 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 tactttacatggatcttatt 62 |||||||||||||||||||| Sbjct: 773 tactttacatggatcttatt 792
>gb|AC166105.4| Mus musculus BAC clone RP23-251L22 from chromosome 14, complete sequence Length = 231837 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 ttccagtactcagctcaat 79 ||||||||||||||||||| Sbjct: 104553 ttccagtactcagctcaat 104535
>gb|AC134842.3| Mus musculus BAC clone RP24-375P18 from chromosome 14, complete sequence Length = 154676 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 55 atcttattccagtactcag 73 ||||||||||||||||||| Sbjct: 60974 atcttattccagtactcag 60992
>emb|CR450741.5| Zebrafish DNA sequence from clone CH211-269F16 in linkage group 24, complete sequence Length = 157603 Score = 38.2 bits (19), Expect = 5.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 26 tttattggggatgtacttacttt 48 ||||||||||||||| ||||||| Sbjct: 32049 tttattggggatgtaattacttt 32071
>gb|AC114543.10| Mus musculus, clone RP24-107C11, complete sequence Length = 191639 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 61 ttccagtactcagctcaat 79 ||||||||||||||||||| Sbjct: 14790 ttccagtactcagctcaat 14808
>gb|DQ174370.1| Misumenops dalmasi isolate 657 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 820 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 44 actttacatggatcttatt 62 ||||||||||||||||||| Sbjct: 775 actttacatggatcttatt 793
>gb|DQ174367.1| Misumenops dalmasi isolate 479 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 820 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 44 actttacatggatcttatt 62 ||||||||||||||||||| Sbjct: 775 actttacatggatcttatt 793
>gb|AC147892.2| Xenopus tropicalis clone CH216-35D21, complete sequence Length = 178580 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 ctttacatggatcttattc 63 ||||||||||||||||||| Sbjct: 66042 ctttacatggatcttattc 66024
>gb|AC092601.3| Homo sapiens BAC clone RP11-125M15 from 2, complete sequence Length = 198364 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 tactttacatggatcttat 61 ||||||||||||||||||| Sbjct: 23318 tactttacatggatcttat 23336
>emb|BX537129.6| Zebrafish DNA sequence from clone CH211-236I20 in linkage group 18, complete sequence Length = 166655 Score = 38.2 bits (19), Expect = 5.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 26 tttattggggatgtacttacttt 48 ||||||||||||||| ||||||| Sbjct: 113751 tttattggggatgtaattacttt 113729
>gb|AC142266.3| Mus musculus BAC clone RP24-380K14 from 14, complete sequence Length = 185704 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 55 atcttattccagtactcag 73 ||||||||||||||||||| Sbjct: 179066 atcttattccagtactcag 179084 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 796,258 Number of Sequences: 3902068 Number of extensions: 796258 Number of successful extensions: 47105 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47071 Number of HSP's gapped (non-prelim): 34 length of query: 110 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 89 effective length of database: 17,151,101,840 effective search space: 1526448063760 effective search space used: 1526448063760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)