ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PDLI7_CHICK (Q679P3) PDZ and LIM domain protein 7 (LIM mineraliz... 30 2.2
2PT1_MYCGE (P47668) Phosphoenolpyruvate-protein phosphotransferas... 28 8.5

>PDLI7_CHICK (Q679P3) PDZ and LIM domain protein 7 (LIM mineralization protein)|
          Length = 416

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 115 QNWVHACGDRLCTTLQTMQ 171
           QN + ACGDRLC TL   Q
Sbjct: 67  QNRIRACGDRLCLTLSRAQ 85



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>PT1_MYCGE (P47668) Phosphoenolpyruvate-protein phosphotransferase (EC|
           2.7.3.9) (Phosphotransferase system, enzyme I)
          Length = 572

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +1

Query: 43  YMVYSIHDGLMALCNRVRPSRKINQNWVHACGDRLCTTLQTMQYVSPL*SGLDLPSAS 216
           Y+   ++  L+ L   V    K+N  W   CG+     + + QY  PL  GL L   S
Sbjct: 468 YLYQPLNPALLRLIKLVVEGGKLNNVWTGMCGE-----MASDQYAIPLLLGLGLTELS 520


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,406,014
Number of Sequences: 219361
Number of extensions: 620444
Number of successful extensions: 1103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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