>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                            
Query: 174      tgtcagtccattgtgatccggcctggacctcccttcagcgagcg 217
                |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 32987631 tgtcagtccattgtgatccggcctggccctcccttcagtgagcg 32987588



 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                            
Query: 174      tgtcagtccattgtgatccggcctggacctcccttcagcgagcg 217
                |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 32969862 tgtcagtccattgtgatccggcctggccctcccttcagtgagcg 32969819

>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0010B10
          Length = 155263

 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                         
Query: 174   tgtcagtccattgtgatccggcctggacctcccttcagcgagcg 217
             |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 53859 tgtcagtccattgtgatccggcctggccctcccttcagtgagcg 53816



 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                         
Query: 174   tgtcagtccattgtgatccggcctggacctcccttcagcgagcg 217
             |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 36090 tgtcagtccattgtgatccggcctggccctcccttcagtgagcg 36047

>dbj|AK100383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085G23, full
            insert sequence
          Length = 3262

 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 174  tgtcagtccattgtgatccggcctggacctcccttcagcgagcg 217
            |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 3047 tgtcagtccattgtgatccggcctggccctcccttcagtgagcg 3004

>ref|XM_463460.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2838

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                      
Query: 176  tcagtccattgtgatccggcctggacctcccttcagcgagcg 217
            |||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 2838 tcagtccattgtgatccggcctggccctcccttcagtgagcg 2797

>ref|XM_463457.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2841

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                      
Query: 176  tcagtccattgtgatccggcctggacctcccttcagcgagcg 217
            |||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 2841 tcagtccattgtgatccggcctggccctcccttcagtgagcg 2800

>gb|AY109443.1| Zea mays CL3420_1 mRNA sequence
          Length = 1424

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 174 tgtcagtccattgtgatccggcctggacctccctt 208
           ||||||||||| ||||||| ||| |||||||||||
Sbjct: 159 tgtcagtccatggtgatcctgcccggacctccctt 193

>gb|AC002429.1| Homo sapiens BAC clone GS1-200K5 from 7, complete sequence
          Length = 234053

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 102    gagaaaaatcaatcaaaattg 122
              |||||||||||||||||||||
Sbjct: 121168 gagaaaaatcaatcaaaattg 121188

>emb|CR956421.19| Pig DNA sequence from clone PigE-225A14 on chromosome 6, complete
             sequence
          Length = 127959

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   gagaaaaatcaatcaaaattg 122
             |||||||||||||||||||||
Sbjct: 73150 gagaaaaatcaatcaaaattg 73170

>gb|AC153608.10| Mus musculus 6 BAC RP23-79A7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 188294

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   ccggcctggacctcccttca 210
             ||||||||||||||||||||
Sbjct: 79761 ccggcctggacctcccttca 79780

>gb|AC146865.11| Medicago truncatula clone mth2-36m14, complete sequence
          Length = 128493

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   agaaaaatcaatcaaaattg 122
             ||||||||||||||||||||
Sbjct: 72527 agaaaaatcaatcaaaattg 72508

>emb|AL590705.9| Human DNA sequence from clone RP11-498P14 on chromosome 9 Contains four
              novel genes, a novel gene similar to FLJ23393. the 5' end
              of a novel gene (KIAA1529) and two CpG islands, complete
              sequence
          Length = 130244

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    aatcaatcaaaattgggttc 127
              ||||||||||||||||||||
Sbjct: 104751 aatcaatcaaaattgggttc 104770

>emb|AL354915.5| Human DNA sequence from clone RP11-392A19 on chromosome 13 Contains a
              novel pseudogene and a keratin 18 (KRT18) (K18, CYK18)
              pseudogene, complete sequence
          Length = 156442

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    agaaaaatcaatcaaaattg 122
              ||||||||||||||||||||
Sbjct: 103271 agaaaaatcaatcaaaattg 103252

>emb|AL139008.10| Human DNA sequence from clone RP11-255A11 on chromosome 9 Contains
            four novel genes, the gene for a novel protein similar to
            suppressor of G2 allele of SKP1 homolog, the gene for a
            novel protein similar to KIAA1074, a melanoma antigen
            pseudogene, a sorting nexin 18 (SNX18) pseudogene, a
            trypsin domain pseudogene, two genes for novel
            immunoglobulin domain containing proteins, the gene for a
            novel protein similar to annexin A2 (ANXA2), the gene for
            a novel protein similar to T-cell receptor beta chain V
            region proteins, a T-cell receptor beta chain V region
            protein LB2 pseudogene and two CpG islands, complete
            sequence
          Length = 159974

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  aatcaatcaaaattgggttc 127
            ||||||||||||||||||||
Sbjct: 3979 aatcaatcaaaattgggttc 3960

>emb|AJ242954.1|MMU242954 Mus musculus partial mRNA for dysferlin (dysf gene)
          Length = 5078

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 191  ccggcctggacctcccttca 210
            ||||||||||||||||||||
Sbjct: 3995 ccggcctggacctcccttca 4014

>emb|BX890609.7| Zebrafish DNA sequence from clone DKEY-56E5, complete sequence
          Length = 228713

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 107   aaatcaatcaaaattgggttcatg 130
             ||||||| ||||||||||||||||
Sbjct: 87668 aaatcaaacaaaattgggttcatg 87691

>gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, complete sequence
          Length = 202543

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   gagaaaaatcaatcaaaatt 121
             ||||||||||||||||||||
Sbjct: 32444 gagaaaaatcaatcaaaatt 32425

>dbj|AK087986.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430001M20
            product:dysferlin, full insert sequence
          Length = 2533

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 191  ccggcctggacctcccttca 210
            ||||||||||||||||||||
Sbjct: 1449 ccggcctggacctcccttca 1468

>gb|AC092492.1|AC092492 Drosophila melanogaster, chromosome 2L, region 30B-30E, BAC clone
              BACR20B09, complete sequence
          Length = 177997

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 104    gaaaaatcaatcaaaattgggttc 127
              ||||||||||||||||||| ||||
Sbjct: 145734 gaaaaatcaatcaaaattgtgttc 145711

>gb|BC043692.1| Mus musculus dysferlin, mRNA (cDNA clone IMAGE:5150289), partial
           cds
          Length = 2046

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 191 ccggcctggacctcccttca 210
           ||||||||||||||||||||
Sbjct: 949 ccggcctggacctcccttca 968

>gb|AC016751.7| Homo sapiens BAC clone RP11-504O20 from 2, complete sequence
          Length = 176379

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   agaaaaatcaatcaaaattg 122
             ||||||||||||||||||||
Sbjct: 45960 agaaaaatcaatcaaaattg 45941

>gb|AF011889.1|AF011889 Human Xq28 cosmids U126G1, U142F2, U69B6, U145C10, U169A5, U84H1, U24D12,
              U80A7, U153E6, L35485, and R7-163A8 containing iduronate
              2-sulfatase gene and pseudogene, complete sequence
          Length = 326663

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    agaaaaatcaatcaaaattg 122
              ||||||||||||||||||||
Sbjct: 154108 agaaaaatcaatcaaaattg 154127

>ref|XM_232123.3| PREDICTED: Rattus norvegicus dysferlin (predicted) (Dysf_predicted),
            mRNA
          Length = 6810

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 191  ccggcctggacctcccttca 210
            ||||||||||||||||||||
Sbjct: 5673 ccggcctggacctcccttca 5692

>dbj|AK131144.1| Mus musculus mRNA for mFLJ00175 protein
          Length = 6660

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 191  ccggcctggacctcccttca 210
            ||||||||||||||||||||
Sbjct: 5574 ccggcctggacctcccttca 5593

>emb|CT574592.2| Pan troglodytes chromosome X clone PTB-082B15 map Xq28, complete sequence
          Length = 228540

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    agaaaaatcaatcaaaattg 122
              ||||||||||||||||||||
Sbjct: 115205 agaaaaatcaatcaaaattg 115224

>gb|AE003624.3| Drosophila melanogaster chromosome 2L, section 33 of 83 of the complete
              sequence
          Length = 270771

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 104    gaaaaatcaatcaaaattgggttc 127
              ||||||||||||||||||| ||||
Sbjct: 199509 gaaaaatcaatcaaaattgtgttc 199486

>gb|AC099643.5| Mus musculus chromosome 7, clone RP24-350G1, complete sequence
          Length = 139303

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   gagaaaaatcaatcaaaatt 121
             ||||||||||||||||||||
Sbjct: 15634 gagaaaaatcaatcaaaatt 15615


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,709,579
Number of Sequences: 3902068
Number of extensions: 1709579
Number of successful extensions: 122328
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122240
Number of HSP's gapped (non-prelim): 88
length of query: 217
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 195
effective length of database: 17,147,199,772
effective search space: 3343703955540
effective search space used: 3343703955540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)