ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl17h11 |
|---|---|
| Clone Library Name | barley_pub |
>GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 634 Score = 30.8 bits (68), Expect = 0.84 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -2 Query: 175 CN*PQSCLVARMDRHATCTHSGGHVGVELVVSFDLKLICICI 50 CN +S LV D TH+G +GV SF +L+C+ + Sbjct: 387 CNGARSTLVRESDA-VLLTHAGSEIGVASTKSFTTQLVCLLV 427
>LSHB_HORSE (P08751) Lutropin/choriogonadotropin beta chain precursor| (LSH-B/CG-B) (Lutenizing hormone beta subunit) Length = 169 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/52 (34%), Positives = 24/52 (46%) Frame = -2 Query: 166 PQSCLVARMDRHATCTHSGGHVGVELVVSFDLKLICICIKCVLKVTSLELIR 11 PQ R R A+ G GV+ +VSF + L C C C +K T + R Sbjct: 73 PQPVCTYRELRFASIRLPGCPPGVDPMVSFPVALSCHCGPCQIKTTDCGVFR 124
>LSHB_EQUBU (O46641) Lutropin/choriogonadotropin beta chain precursor| (LSH-B/CG-B) (Lutenizing hormone beta subunit) Length = 169 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/46 (39%), Positives = 22/46 (47%) Frame = -2 Query: 166 PQSCLVARMDRHATCTHSGGHVGVELVVSFDLKLICICIKCVLKVT 29 PQ R R A+ G GV+ +VSF + L C C C LK T Sbjct: 73 PQPVCTYRELRFASIRLPGCPPGVDPMVSFPVALSCHCGPCRLKTT 118
>DNAK_ANAVT (O05714) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 688 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +2 Query: 236 EHSEGSSVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIP 358 E+++ S E M G++K+L + K G+ PRGIP Sbjct: 425 ENNQNSVEIHVVQGEREMAGDNKSLGRFKLYGIPPAPRGIP 465
>DNAK1_ANASP (Q9ZEJ6) Chaperone protein dnaK1 (Heat shock protein 70-1) (Heat| shock 70 kDa protein 1) (HSP70-1) Length = 688 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +2 Query: 236 EHSEGSSVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIP 358 E+++ S E M G++K+L + K G+ PRGIP Sbjct: 425 ENNQNSVEIHVVQGEREMAGDNKSLGRFKLYGIPPAPRGIP 465
>PHSA_SALTY (P37600) Thiosulfate reductase precursor (EC 1.-.-.-)| Length = 758 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +3 Query: 18 SSKDVTFSTHLIHIQISLRSKDTTSSTPTCP 110 SSK + S+HL H+ + S +T + TCP Sbjct: 145 SSKSGSLSSHLFHLATAFGSPNTFTHASTCP 175
>CATA_EMENI (P55305) Catalase A (EC 1.11.1.6) (Spore-specific catalase)| Length = 744 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 331 PLGFDLMQVFGVPQHGMLGGKGCRHGGSFTMLLHLGI 221 P + +MQ FGV ++ +G RH F + HLG+ Sbjct: 228 PRSYRMMQGFGVNTFSLVNKEGKRHFVKFHWIPHLGV 264
>CATA_ASPFU (P78574) Catalase A (EC 1.11.1.6) (Fast catalase)| Length = 750 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 331 PLGFDLMQVFGVPQHGMLGGKGCRHGGSFTMLLHLGI 221 P + +MQ FGV ++ +G RH F + HLG+ Sbjct: 228 PRSYRMMQGFGVNTFALVNKEGKRHFVKFHWIPHLGV 264
>DNAK_PSESG (Q9WWG9) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/75 (22%), Positives = 31/75 (41%) Frame = +2 Query: 134 PVHSGNQTRLRLVTALVDGIKMFLDEPPANAEV*EHSEGSSVTTTFTSEHAMLGNSKNLH 313 P+ G + ++TAL+ FL P+ ++ E + E G +K+L Sbjct: 396 PLTLGIEAMGGVMTALIKKTPRFLPRNPSVLTADDNQENAVAIHVLQGERKQAGQNKSLG 455 Query: 314 QIKA*GVSLTPRGIP 358 + + PRG+P Sbjct: 456 KFDLAEIPPAPRGVP 470
>DNAK_CORJK (Q4JXX6) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 620 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/75 (24%), Positives = 33/75 (44%) Frame = +2 Query: 134 PVHSGNQTRLRLVTALVDGIKMFLDEPPANAEV*EHSEGSSVTTTFTSEHAMLGNSKNLH 313 P+ G +T+ ++T L++ + E S+ S F E M ++K L Sbjct: 370 PLSLGIETKGGVMTKLIERNTTIPTKRSETFTTAEDSQPSVQIQVFQGEREMAAHNKLLG 429 Query: 314 QIKA*GVSLTPRGIP 358 + G++ PRG+P Sbjct: 430 SFELAGIAPAPRGVP 444
>LOX15_PONPY (Q5RBE8) Arachidonate 15-lipoxygenase (EC 1.13.11.33) (Arachidonate| omega-6 lipoxygenase) (15-LOX) Length = 661 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = -3 Query: 264 VVTEDPSLCSYTSAFAGGSSKNIFIPSTRAVTNRNLVWLPEWTG 133 ++T+D C++ S G+ + P R V ++ LPE TG Sbjct: 69 LLTDDAWFCNWISVQGPGAGDEVRFPCYRWVEGNGVLSLPEGTG 112
>LSHB_EQUAS (P19794) Lutropin/choriogonadotropin beta chain precursor| (LSH-B/CG-B) (Lutenizing hormone beta subunit) Length = 169 Score = 27.3 bits (59), Expect = 9.3 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = -2 Query: 166 PQSCLVARMDRHATCTHSGGHVGVELVVSFDLKLICICIKCVLKVT 29 PQ R R + G GV+ +VSF + L C C C LK T Sbjct: 73 PQPVCTYRELRFGSIRLPGCPPGVDPMVSFPVALSCHCGPCRLKTT 118
>COMA_CONMA (Q9TWL9) Conodipine-M alpha chain (EC 3.1.1.4)| Length = 77 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = -2 Query: 163 QSCLVARMDRHATCTHSGGHVG 98 Q +A DRH TC H G H G Sbjct: 26 QKXFLAACDRHDTCYHCGKHFG 47
>RIF1_MOUSE (Q6PR54) Telomere-associated protein RIF1 (Rap1-interacting factor| 1 homolog) (mRif1) Length = 2419 Score = 27.3 bits (59), Expect = 9.3 Identities = 20/57 (35%), Positives = 27/57 (47%) Frame = +2 Query: 137 VHSGNQTRLRLVTALVDGIKMFLDEPPANAEV*EHSEGSSVTTTFTSEHAMLGNSKN 307 VHS + LR TAL G+ + L + A + EH +TT SE L +KN Sbjct: 193 VHSAQKVHLRGATALEMGMPLLLQKQQEIALITEH----LMTTKLISELQKLFKNKN 245
>DNAK_RHILO (Q98DD1) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +2 Query: 236 EHSEGSSVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIP 358 E S+ + F E M ++K L Q G+ PRG+P Sbjct: 425 EDSQSAVTIRVFQGEREMAADNKALGQFDLVGIPPAPRGVP 465
>DNAK_MYCCT (Q2SSB0) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 591 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 278 EHAMLGNSKNLHQIKA*GVSLTPRGIP 358 E AM ++K+L Q + G+ PRGIP Sbjct: 416 ERAMAADNKSLGQFQLTGIQPAPRGIP 442
>DNAK_MYCCA (P0C177) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 591 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 278 EHAMLGNSKNLHQIKA*GVSLTPRGIP 358 E AM ++K+L Q + G+ PRGIP Sbjct: 416 ERAMAADNKSLGQFQLTGIQPAPRGIP 442
>M4A8A_MOUSE (Q99N10) Membrane-spanning 4-domains subfamily A member 8A (CD20| antigen-like 5) (Fragment) Length = 287 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/42 (28%), Positives = 22/42 (52%) Frame = +2 Query: 95 NSYMSTRVGASGMPVHSGNQTRLRLVTALVDGIKMFLDEPPA 220 NSY MP++ NQ ++ +++ + G+ + EPPA Sbjct: 56 NSYPVVPGTVPQMPIYPSNQPQVHVISGHLPGLVPAMTEPPA 97 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,494,158 Number of Sequences: 219361 Number of extensions: 1298728 Number of successful extensions: 3647 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3574 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3647 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
