ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464147.1| Oryza sativa (japonica cultivar-group), mRNA 58 2e-05
2ref|XM_506717.1| PREDICTED Oryza sativa (japonica cultivar-group... 58 2e-05
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
4dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
5dbj|AK121963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
6dbj|AK105609.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
7gb|AY104160.1| Zea mays PCO080306 mRNA sequence 50 0.005
8gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, comp... 44 0.32
9gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, com... 42 1.3
10emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 i... 42 1.3
11emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in ... 42 1.3
12dbj|AK053276.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 42 1.3
13ref|NM_105369.1| Arabidopsis thaliana glycerophosphodiester phos... 40 4.9
14gb|AC164628.8| Mus musculus 6 BAC RP23-82H18 (Roswell Park Cance... 40 4.9
15gb|BT018338.1| Zea mays clone EL01T0403A05.c mRNA sequence 40 4.9
16gb|AC121317.7| Mus musculus chromosome 6, clone RP24-343J20, com... 40 4.9
17gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genom... 40 4.9
18ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 4.9
19ref|XM_732666.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 4.9
20gb|AC107976.4| Homo sapiens chromosome 15, clone CTD-2576F9, com... 40 4.9
21emb|BX294171.10| Zebrafish DNA sequence from clone DKEY-263M10 i... 40 4.9
22gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p... 40 4.9
23gb|AC008273.2| Homo sapiens BAC clone RP11-150O2 from 2, complet... 40 4.9
24gb|AC132220.10| Homo sapiens chromosome 15, clone RP11-1142D4, c... 40 4.9
25gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3... 40 4.9
26emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 i... 40 4.9
27emb|AL672058.5| Zebrafish DNA sequence from clone BUSM1-47J20 in... 40 4.9
28emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 i... 40 4.9
29gb|AY449460.1| Oikopleura dioica clone BACOIKO004 7xk22, complet... 40 4.9
30emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chr... 40 4.9
31emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chr... 40 4.9 
>ref|XM_464147.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3121

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 335  tccctcactcctcgtggtattccgggttcttcttcag 371
            |||||||||||||||  ||||||||||||||||||||
Sbjct: 2770 tccctcactcctcgttatattccgggttcttcttcag 2734
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>ref|XM_506717.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_C03.11 mRNA
          Length = 3169

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 335  tccctcactcctcgtggtattccgggttcttcttcag 371
            |||||||||||||||  ||||||||||||||||||||
Sbjct: 2777 tccctcactcctcgttatattccgggttcttcttcag 2741
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                    
Query: 335     tccctcactcctcgtggtattccgggttcttcttcag 371
               |||||||||||||||  ||||||||||||||||||||
Sbjct: 2570749 tccctcactcctcgttatattccgggttcttcttcag 2570713
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>dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_C03
          Length = 103297

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                  
Query: 335   tccctcactcctcgtggtattccgggttcttcttcag 371
             |||||||||||||||  ||||||||||||||||||||
Sbjct: 49532 tccctcactcctcgttatattccgggttcttcttcag 49496
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>dbj|AK121963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108C09, full
            insert sequence
          Length = 3120

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 335  tccctcactcctcgtggtattccgggttcttcttcag 371
            |||||||||||||||  ||||||||||||||||||||
Sbjct: 2769 tccctcactcctcgttatattccgggttcttcttcag 2733
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>dbj|AK105609.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B03, full
            insert sequence
          Length = 3169

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 335  tccctcactcctcgtggtattccgggttcttcttcag 371
            |||||||||||||||  ||||||||||||||||||||
Sbjct: 2777 tccctcactcctcgttatattccgggttcttcttcag 2741
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>gb|AY104160.1| Zea mays PCO080306 mRNA sequence
          Length = 1460

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 339  tcactcctcgtggtattccgggttcttcttcag 371
            ||||||||||||||| || ||||||||||||||
Sbjct: 1044 tcactcctcgtggtactctgggttcttcttcag 1012
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>gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, complete sequence
          Length = 202294

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 190   aataaaaatgtttttggatgaa 211
             ||||||||||||||||||||||
Sbjct: 56757 aataaaaatgtttttggatgaa 56736
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>gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, complete sequence
          Length = 208850

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 41    tacacacttgatacatataca 61
             |||||||||||||||||||||
Sbjct: 48749 tacacacttgatacatataca 48729
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>emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 in linkage group 24,
              complete sequence
          Length = 143425

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 43     cacacttgatacatatacaaa 63
              |||||||||||||||||||||
Sbjct: 114349 cacacttgatacatatacaaa 114369



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 43     cacacttgatacatatacaaa 63
              |||||||||||||||||||||
Sbjct: 104510 cacacttgatacatatacaaa 104530
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>emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in linkage group 7, complete
              sequence
          Length = 181415

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 43     cacacttgatacatatacaaa 63
              |||||||||||||||||||||
Sbjct: 154850 cacacttgatacatatacaaa 154830
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>dbj|AK053276.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130006D24 product:unclassifiable, full
            insert sequence
          Length = 3651

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 41   tacacacttgatacatataca 61
            |||||||||||||||||||||
Sbjct: 2970 tacacacttgatacatataca 2990
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>ref|NM_105369.1| Arabidopsis thaliana glycerophosphodiester phosphodiesterase/ kinase
            AT1G66980 mRNA, complete cds
          Length = 3512

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 192  taaaaatgtttttggatgaa 211
            ||||||||||||||||||||
Sbjct: 3459 taaaaatgtttttggatgaa 3440
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>gb|AC164628.8| Mus musculus 6 BAC RP23-82H18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205032

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     acacacttgatacatataca 61
              ||||||||||||||||||||
Sbjct: 184660 acacacttgatacatataca 184679
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>gb|BT018338.1| Zea mays clone EL01T0403A05.c mRNA sequence
          Length = 1023

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 339 tcactcctcgtggtattccgggttcttcttca 370
           |||||| || ||||| ||||||||||||||||
Sbjct: 595 tcactcttcatggtactccgggttcttcttca 564
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>gb|AC121317.7| Mus musculus chromosome 6, clone RP24-343J20, complete sequence
          Length = 179807

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    acacacttgatacatataca 61
             ||||||||||||||||||||
Sbjct: 23843 acacacttgatacatataca 23862
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>gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genomic sequence, complete
             sequence
          Length = 90387

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   taaaaatgtttttggatgaa 211
             ||||||||||||||||||||
Sbjct: 27065 taaaaatgtttttggatgaa 27084
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>ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical protein (PC101680.00.0)
           partial mRNA
          Length = 287

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 53  acatatacaaataagcttaa 72
           ||||||||||||||||||||
Sbjct: 213 acatatacaaataagcttaa 232
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>ref|XM_732666.1| Plasmodium chabaudi chabaudi hypothetical protein (PC105151.00.0)
           partial mRNA
          Length = 984

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 45  cacttgatacatatacaaat 64
           ||||||||||||||||||||
Sbjct: 599 cacttgatacatatacaaat 618
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>gb|AC107976.4| Homo sapiens chromosome 15, clone CTD-2576F9, complete sequence
          Length = 131548

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    cagttctaaagatgtaactt 36
             ||||||||||||||||||||
Sbjct: 64502 cagttctaaagatgtaactt 64521
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>emb|BX294171.10| Zebrafish DNA sequence from clone DKEY-263M10 in linkage group 1,
             complete sequence
          Length = 121187

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 298   ctccaaaaacttgcatcaga 317
             ||||||||||||||||||||
Sbjct: 30564 ctccaaaaacttgcatcaga 30545
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>gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p, complete sequence
          Length = 162949

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    atgccgaggtgtaagagcat 241
              ||||||||||||||||||||
Sbjct: 107859 atgccgaggtgtaagagcat 107878
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>gb|AC008273.2| Homo sapiens BAC clone RP11-150O2 from 2, complete sequence
          Length = 151297

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   tccctcactcctcgtggtat 354
             ||||||||||||||||||||
Sbjct: 66748 tccctcactcctcgtggtat 66729
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>gb|AC132220.10| Homo sapiens chromosome 15, clone RP11-1142D4, complete sequence
          Length = 162101

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    cagttctaaagatgtaactt 36
             ||||||||||||||||||||
Sbjct: 67063 cagttctaaagatgtaactt 67044
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>gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3p, complete sequence
          Length = 184579

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   atgccgaggtgtaagagcat 241
             ||||||||||||||||||||
Sbjct: 65374 atgccgaggtgtaagagcat 65393
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>emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 in linkage group 12,
              complete sequence
          Length = 177468

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    taaaaatgtttttggatgaa 211
              ||||||||||||||||||||
Sbjct: 161862 taaaaatgtttttggatgaa 161843
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>emb|AL672058.5| Zebrafish DNA sequence from clone BUSM1-47J20 in linkage group 1,
              complete sequence
          Length = 130339

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    ctccaaaaacttgcatcaga 317
              ||||||||||||||||||||
Sbjct: 100541 ctccaaaaacttgcatcaga 100560
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>emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 in linkage group 5,
             complete sequence
          Length = 209796

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    tacacacttgatacatatac 60
             ||||||||||||||||||||
Sbjct: 49955 tacacacttgatacatatac 49936
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>gb|AY449460.1| Oikopleura dioica clone BACOIKO004 7xk22, complete sequence
          Length = 131867

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   tttttggatgaaccaccagc 219
             ||||||||||||||||||||
Sbjct: 64488 tttttggatgaaccaccagc 64507
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>emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chromosome 2, complete
             sequence
          Length = 151493

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   aataaaaatgtttttggatg 209
             ||||||||||||||||||||
Sbjct: 61609 aataaaaatgtttttggatg 61590
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>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete
             sequence
          Length = 221374

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    acacacttgatacatataca 61
             ||||||||||||||||||||
Sbjct: 64556 acacacttgatacatataca 64575


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,451,489
Number of Sequences: 3902068
Number of extensions: 3451489
Number of successful extensions: 62562
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62469
Number of HSP's gapped (non-prelim): 93
length of query: 371
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 349
effective length of database: 17,147,199,772
effective search space: 5984372720428
effective search space used: 5984372720428
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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