ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TPC1_ORYSA (Q5QM84) Probable voltage-dependent calcium channel p... 29 2.6
2YFK5_SCHPO (P87132) Hypothetical protein C167.05 in chromosome I 28 7.7
3ADAM2_BOVIN (O77780) ADAM 2 precursor (A disintegrin and metallo... 27 10.0

>TPC1_ORYSA (Q5QM84) Probable voltage-dependent calcium channel protein TPC1|
           (Probable voltage-gated calcium channel) (Two-pore
           calcium channel protein)
          Length = 757

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 253 ATLSLKSNYMYTSEHFCIYCKTIVTSEGK--LPAYLQRYPT 137
           A L    ++  TSE F   C TI     K   P+YL++YP+
Sbjct: 398 AELDQSGDFKVTSEEFATLCNTIAIKFQKEPPPSYLEKYPS 438



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>YFK5_SCHPO (P87132) Hypothetical protein C167.05 in chromosome I|
          Length = 601

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +1

Query: 67  KSSKVDLNVMYLTVNALSYMDPTEWGTFANKQAICLQR*QWFCSKYKNVRLCTYNLT 237
           KS KVD+              PT W   AN+   C++R  +  +   + R CTY LT
Sbjct: 393 KSMKVDIG-------------PTRWIPTANRTIRCIRRGDFQTAASSSKRNCTYFLT 436



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>ADAM2_BOVIN (O77780) ADAM 2 precursor (A disintegrin and metalloproteinase|
           domain 2) (Fertilin beta subunit) (PH-30) (PH30)
           (PH30-beta)
          Length = 745

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
 Frame = +1

Query: 142 GTFANKQAICLQR*QWFCSKYKNVRLCTYNLTSVKALLQGKCF---HCHCNRLFLAP 303
           GT   +  IC Q  Q   S + N     Y+    K   QG C    HCHCN  +L P
Sbjct: 591 GTVCGESKIC-QNKQCVDSSFLN-----YDCNPEKCNNQGVCNNKKHCHCNPSYLPP 641


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,190,096
Number of Sequences: 219361
Number of extensions: 915835
Number of successful extensions: 2166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2166
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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