>HSP7C_TRYBB (P20030) Heat shock cognate HSP70 protein|
          Length = 676

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 107 TLHGSSS*QSGTMYAVWFSWQRNRIELLQEEPRNGNNPPTIATIN 241
           T  G+     GT Y+    WQ  R+E++  +  N   P  +A +N
Sbjct: 2   TYEGAIGIDLGTTYSCVGVWQNERVEIIANDQGNRTTPSYVAFVN 46

>ENV_SRV1 (P04027) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP70; Coat protein GP20]
          Length = 587

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
 Frame = -2

Query: 273 DASEPRYLAYELMVAIVGG-----LLPFLGSSCSNSILFLCHENHTAYMVPDC*LLLPCN 109
           + S  R LA +  + +  G      LP+  +SCSNS  F    N +  + P   L+ P N
Sbjct: 237 NVSSQRQLAEDCWLCLRSGDPVPLALPYDNTSCSNSTFFFNCSNCSCLITPPF-LVQPFN 295

Query: 108 VL-SVCFWCD 82
              SVC + D
Sbjct: 296 FTHSVCLYAD 305

>TETX_CLOTE (P04958) Tetanus toxin precursor (EC 3.4.24.68) (Tentoxylysin)|
           [Contains: Tetanus toxin light chain (Tetanus toxin
           chain L); Tetanus toxin heavy chain (Tetanus toxin chain
           H)]
          Length = 1314

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +1

Query: 184 ITTGRTKEWQQPSHYSNHQLVSQVAGL*CIIITRHDMLP 300
           +T G++K +Q P+    H+L+  + GL  + ++ H+++P
Sbjct: 215 LTIGKSKYFQDPALLLMHELIHVLHGLYGMQVSSHEIIP 253

>POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +2

Query: 71  RVPTSHQKQTDSTLHGSSS*QSGTMYAVWFSWQRNRIELLQEEPRNGNNP 220
           R P+S    T+ST  GSSS  +G +YA     +R   E +Q   R    P
Sbjct: 446 RGPSSAGADTNSTPSGSSSGSTGEIYAAREKTERAERETIQGSDRGLTAP 495

>L_EBOSM (Q66802) Large structural protein (L protein) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2210

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 38   SAFMFPVPFDSRVPTSHQKQTDSTLHGSSS*QSGTMYAVWFSWQRNRI 181
            S +  P    S +P +H+ + +  L+ S+S  +   +  WFS Q+NRI
Sbjct: 1867 SGYTTPRMLLSVMPRTHRGELEVILNNSASQITDITHRDWFSNQKNRI 1914

>HSP70_LEIAM (Q07437) Heat shock 70 kDa protein|
          Length = 652

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 107 TLHGSSS*QSGTMYAVWFSWQRNRIELLQEEPRNGNNPPTIA 232
           T  G+     GT Y+    WQ +R+E++  +  N   P  +A
Sbjct: 2   TFDGAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVA 43

>DPOA2_YEAST (P38121) DNA polymerase alpha subunit B (P86 subunit)|
          Length = 705

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 17  SQNKLEFSAFMFPVPFDSRVPTSHQKQTDSTLHGSSS*QSGT 142
           S  KLEF+  M         P SH K +D+   GSS+ Q+ T
Sbjct: 146 SSLKLEFTPGMAEDAVGDSAPLSHAKSSDAKTPGSSTFQTPT 187

>PPZ_SCHPO (P78968) Serine/threonine-protein phosphatase PP-Z (EC 3.1.3.16)|
          Length = 515

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 198 NQGMATTLPL*QPSTRKPGSGALMHHHNQT*HASSHGVKPSYSAS 332
           +Q   +  P  QP+   P + A  HHH+ +  +SS+ V P+   S
Sbjct: 96  SQSPTSPHPSNQPAMLSPSTAASQHHHHHS-SSSSYAVSPTSPTS 139


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,412,045
Number of Sequences: 219361
Number of extensions: 902142
Number of successful extensions: 1920
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1920
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)