ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y163_SYNY3 (Q55563) Hypothetical WD-repeat protein sll0163 30 1.8
2PKHA6_HUMAN (Q9Y2H5) Pleckstrin homology domain-containing famil... 28 5.4
3PKHA6_MOUSE (Q7TQG1) Pleckstrin homology domain-containing famil... 28 5.4
4ALDH_ENCBU (Q27640) Aldehyde dehydrogenase (EC 1.2.1.3) (Aldehyd... 27 9.2

>Y163_SYNY3 (Q55563) Hypothetical WD-repeat protein sll0163|
          Length = 1693

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = -1

Query: 332  NVERERETLLRSAIVYPLVCLLLAVKI*GQD 240
            N+E++ + +L+  +VYPL  LL AVK  GQD
Sbjct: 942  NLEKQCQFILKQFLVYPLEALLAAVKT-GQD 971



to top

>PKHA6_HUMAN (Q9Y2H5) Pleckstrin homology domain-containing family A member 6|
           (Phosphoinositol 3-phosphate-binding protein 3) (PEPP-3)
          Length = 1048

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 62  KQWQRRWYMYVRSCLMCY 9
           KQW +RW++ V  CL  Y
Sbjct: 75  KQWNKRWFVLVDRCLFYY 92



to top

>PKHA6_MOUSE (Q7TQG1) Pleckstrin homology domain-containing family A member 6|
           (Phosphoinositol 3-phosphate-binding protein 3) (PEPP-3)
          Length = 1173

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 62  KQWQRRWYMYVRSCLMCY 9
           KQW +RW++ V  CL  Y
Sbjct: 75  KQWNKRWFVLVDRCLFYY 92



to top

>ALDH_ENCBU (Q27640) Aldehyde dehydrogenase (EC 1.2.1.3) (Aldehyde|
           dehydrogenase [NAD+])
          Length = 497

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 246 PRFIITVAPA*MHA*SLALPNHPDVN 169
           P  +I + P   H    AL NHPD+N
Sbjct: 212 PAGVINIVPGLGHTAGAALTNHPDIN 237


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,070,684
Number of Sequences: 219361
Number of extensions: 599871
Number of successful extensions: 1051
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top