ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPB_GADMO (P83456) Alkaline phosphatase (EC 3.1.3.1) (AP) 28 4.9
2YLK1_CAEEL (P41949) Hypothetical protein D1044.1 28 6.3
3YVKB_VACCC (P20570) Hypothetical 9.0 kDa protein 28 8.3

>PPB_GADMO (P83456) Alkaline phosphatase (EC 3.1.3.1) (AP)|
          Length = 477

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = +1

Query: 13  GRITRGSTSQGGHQTIHLKDEITKAEGRNVALTKTXXXXXXXXXXXXHICSFQG 174
           GRI  G       Q IH   E+ +A GR   +T T            H+ SF G
Sbjct: 317 GRIDHGHHEGKDKQAIHEAVEMDRAIGRADLMTSTSDTLTVVTADHSHLFSFGG 370



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>YLK1_CAEEL (P41949) Hypothetical protein D1044.1|
          Length = 382

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 236 AYYRMLFKSSTQIERLCMIEVPWKLQICRGKQQEDG 129
           AY RML   +   E+LC  E+  ++Q  +    EDG
Sbjct: 193 AYIRMLHNDTLDFEKLCPAELSGRIQEVKHAFDEDG 228



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>YVKB_VACCC (P20570) Hypothetical 9.0 kDa protein|
          Length = 79

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 125 FCHLPVAYPYIFVVSRVLLSCIV 193
           +CH+P+ Y  + +  RVLLS I+
Sbjct: 24  YCHVPLKYIVLMIAHRVLLSSIL 46


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,591,947
Number of Sequences: 219361
Number of extensions: 405963
Number of successful extensions: 761
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 80,573,946
effective HSP length: 54
effective length of database: 68,728,452
effective search space used: 1649482848
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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