ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE014314.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 3.0
2emb|AL138701.16| Human DNA sequence from clone RP11-406G20 on ch... 40 3.0
3gb|AY117542.1| Litopenaeus stylirostris elongation factor 1-alph... 40 3.0
4emb|CR932808.1| Mus musculus chromosome 2, clone RPCI-21-370D12 ... 40 3.0
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
6gb|AC005104.1| Homo sapiens BAC clone CTA-442F18 from 2, complet... 40 3.0
7emb|AJ324065.1|HSA324065 Homo sapiens genomic sequence surroundi... 40 3.0
8emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4,... 40 3.0
9emb|AL844538.9| Mouse DNA sequence from clone RP23-289K19 on chr... 40 3.0

>gb|AE014314.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 11 of
              11 of the complete sequence
          Length = 249198

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     aggcagagggaagaaatgtt 102
              ||||||||||||||||||||
Sbjct: 175327 aggcagagggaagaaatgtt 175346



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>emb|AL138701.16| Human DNA sequence from clone RP11-406G20 on chromosome 13, complete
              sequence
          Length = 173496

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     aggcagagggaagaaatgtt 102
              ||||||||||||||||||||
Sbjct: 105833 aggcagagggaagaaatgtt 105852



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>gb|AY117542.1| Litopenaeus stylirostris elongation factor 1-alpha mRNA, partial
           cds
          Length = 382

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 53  aaacaatacatcttaaagacgagataac 80
           |||| ||||||||||||||| |||||||
Sbjct: 356 aaaccatacatcttaaagactagataac 329



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>emb|CR932808.1| Mus musculus chromosome 2, clone RPCI-21-370D12 strain 129/Sv, complete
              sequence
          Length = 163435

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    cagggtacttctatcatgca 188
              ||||||||||||||||||||
Sbjct: 102808 cagggtacttctatcatgca 102789



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 151      ctacatatttgtagtttcca 170
                ||||||||||||||||||||
Sbjct: 13674993 ctacatatttgtagtttcca 13675012



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>gb|AC005104.1| Homo sapiens BAC clone CTA-442F18 from 2, complete sequence
          Length = 134911

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    aagaataactagaggaagca 34
             ||||||||||||||||||||
Sbjct: 48087 aagaataactagaggaagca 48068



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>emb|AJ324065.1|HSA324065 Homo sapiens genomic sequence surrounding NotI site, clone
           NL1-VJ21C
          Length = 662

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 144 cttacccctacatatttgta 163
           ||||||||||||||||||||
Sbjct: 522 cttacccctacatatttgta 503



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>emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079M09,
             complete sequence
          Length = 187359

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   ctacatatttgtagtttcca 170
             ||||||||||||||||||||
Sbjct: 69601 ctacatatttgtagtttcca 69620



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>emb|AL844538.9| Mouse DNA sequence from clone RP23-289K19 on chromosome 2, complete
             sequence
          Length = 180252

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   cagggtacttctatcatgca 188
             ||||||||||||||||||||
Sbjct: 19085 cagggtacttctatcatgca 19104


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,014,320
Number of Sequences: 3902068
Number of extensions: 2014320
Number of successful extensions: 35204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35173
Number of HSP's gapped (non-prelim): 31
length of query: 237
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 215
effective length of database: 17,147,199,772
effective search space: 3686647950980
effective search space used: 3686647950980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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