ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl17h02 |
|---|---|
| Clone Library Name | barley_pub |
>PODXL_MOUSE (Q9R0M4) Podocalyxin-like protein 1 precursor| Length = 503 Score = 30.4 bits (67), Expect = 1.1 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%) Frame = +2 Query: 113 PLELMALASVSFPWRTLLSDAELYFSSVDDATTKPEPTFQYFPSPA-----QHLP-PLPC 274 P + L +VS L + ++L + D TT P+ PS A QH P +P Sbjct: 137 PTTTLGLINVSSQPTDLNTTSKLLSTPTTDNTTSPQQPVDSSPSTASHPVGQHTPAAVPS 196 Query: 275 TSGSSPSEFDTDTS 316 +SGS+PS TD S Sbjct: 197 SSGSTPS---TDNS 207
>SYV_ONYPE (Q6YRJ6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 882 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +2 Query: 140 VSFPWRTLLSDAELYFSSVDDATTKPEPTF 229 V FP + LSDA L S ++ ATT+PE F Sbjct: 204 VDFPTNSNLSDASLVPSFLEIATTRPETMF 233
>LASS1_MOUSE (P27545) LAG1 longevity assurance homolog 1 (UOG-1 protein)| Length = 350 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Frame = -1 Query: 196 DGGEVQLGVGEQRSPWEAHGGERHQLQGLAVRLACCGFFSKMFVYGWL----FPVSKL 35 D +VQL + ++A GG H+L GL L C F F + W FP+ L Sbjct: 210 DVSDVQLEFTKLNIYFKARGGAYHRLHGLVANLGCLSF---CFCWFWFRLYWFPLKVL 264
>IPNS_STRCT (Q53932) Isopenicillin N synthetase (EC 1.21.3.1) (IPNS)| (Isopenicillin N synthase) Length = 321 Score = 28.5 bits (62), Expect = 4.1 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 10/69 (14%) Frame = -1 Query: 262 WQVLRRGREVLEGW------LGLGRRVVDGG----EVQLGVGEQRSPWEAHGGERHQLQG 113 + + R GRE +E W G ++ G EV + E+R P GE++ + Sbjct: 90 YYMARPGRETVESWCYLNPSFGEDHPMMKAGTPMHEVNVWPDEERHPDFGSFGEQYHREV 149 Query: 112 LAVRLACCG 86 A R CCG Sbjct: 150 SASRRCCCG 158
>CF182_RAT (Q6AXZ4) Protein C6orf182 homolog| Length = 430 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/62 (30%), Positives = 27/62 (43%) Frame = +2 Query: 170 DAELYFSSVDDATTKPEPTFQYFPSPAQHLPPLPCTSGSSPSEFDTDTSLQLLHILSIMY 349 DAEL S + PE Y PS +Q C GSSP F++ + L+ L + Sbjct: 2 DAELPHSMIGSYLNPPER--MYLPSFSQTEASQNCHPGSSPKMFNSPNNQALVSALKTLQ 59 Query: 350 SR 355 + Sbjct: 60 EK 61
>VGLG_BRSVA (P62648) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Frame = +2 Query: 128 ALASVSFPWRTLLSDAELYFSSVDDATTKP--EPTFQYFPSPAQHLPPLPCTSGSSPSEF 301 AL S++ T L + + SV +A KP +PT Q P H P LP + Sbjct: 42 ALTSLAMITLTSLVITAIIYISVGNAKAKPTSKPTTQQTQQPQNHTPLLPTEHNHKSTHT 101 Query: 302 DTDTS 316 T ++ Sbjct: 102 STQST 106
>VGLG_BRSV2 (O10685) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Frame = +2 Query: 128 ALASVSFPWRTLLSDAELYFSSVDDATTKP--EPTFQYFPSPAQHLPPLPCTSGSSPSEF 301 AL S++ T L + + SV +A KP +PT Q P H P LP + Sbjct: 42 ALTSLAMITLTSLVITAIIYISVGNAKAKPTSKPTTQQTQQPQNHTPLLPTEHNHKSTHT 101 Query: 302 DTDTS 316 T ++ Sbjct: 102 STQST 106
>ZBTB5_MOUSE (Q7TQG0) Zinc finger and BTB domain-containing protein 5| (Transcription factor ZNF-POZ) Length = 670 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Frame = +2 Query: 218 EPTFQYFPSPAQHLPPLPC--TSGSSPSEFDTDTSLQLLHILSIMYSRAM 361 EP +F P Q + LPC TSG +F D S L + S +SRAM Sbjct: 467 EPADSHFVRPMQEVMGLPCVQTSGYQGEQFGMDFSRSGLGLHS-SFSRAM 515
>LASS1_HUMAN (P27544) LAG1 longevity assurance homolog 1 (UOG-1 protein) (LAG1| protein) Length = 350 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = -1 Query: 196 DGGEVQLGVGEQRSPWEAHGGERHQLQGLAVRLACCGF-FSKMFVYGWLFPVSKL 35 D +VQL + +++ GG H+L LA L C F FS + + FP+ L Sbjct: 210 DISDVQLEFTKLNIYFKSRGGSYHRLHALAADLGCLSFGFSWFWFRLYWFPLKVL 264
>Y2077_ARCFU (O28202) Hypothetical protein AF2077 precursor| Length = 270 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +2 Query: 170 DAELYFSSVDDATTKPEPTFQY 235 D ELYFS+ +D T PTF Y Sbjct: 72 DVELYFSTPNDILTFSNPTFLY 93
>PKWA_THECU (P49695) Probable serine/threonine-protein kinase pkwA (EC| 2.7.11.1) Length = 742 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/32 (37%), Positives = 14/32 (43%) Frame = +2 Query: 203 ATTKPEPTFQYFPSPAQHLPPLPCTSGSSPSE 298 ATT P P+ P P H PP P P + Sbjct: 290 ATTSPNPSLAIEPPPPSHGPPRPSEPLPDPGD 321
>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 845 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/77 (24%), Positives = 31/77 (40%) Frame = +2 Query: 62 IHKHF*EETTACKPHC*PLELMALASVSFPWRTLLSDAELYFSSVDDATTKPEPTFQYFP 241 +HKH+ C + + +F L D + ++ V T P+P P Sbjct: 690 VHKHYGPRLKCCSGKAPEPQPQGFDNQAF-----LPDHKANWAPVPSPTHDPKPAEA--P 742 Query: 242 SPAQHLPPLPCTSGSSP 292 PA+ PP P + G +P Sbjct: 743 MPAEPAPPGPASPGGAP 759
>HMCS1_RAT (P17425) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 520 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +2 Query: 230 QYFPSPAQHLPPLPCTSGSSPS 295 ++ PSPA+ +P LP TSG S Sbjct: 491 EHIPSPAKKVPRLPATSGEPES 512
>MRAW_THETN (Q8R9F9) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 308 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +2 Query: 173 AELYFSSVDDATTKPEPTFQYFPSPAQHLPPLPCTSGSSP 292 A + F S++D K TF+ +P P LPCT G P Sbjct: 237 AVITFHSLEDRIVKN--TFKKLENPCTCPPGLPCTCGKQP 274
>BEH2_ARATH (Q94A43) BES1/BZR1 homolog protein 2| Length = 318 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +2 Query: 200 DATTKPEPTFQYFPSPAQHLPPLPCTSG-SSPSEFDTDTSLQLL 328 +++ +P P FPSPA P +S SPS +D + S LL Sbjct: 101 NSSIQPSPQSSAFPSPAPSYHGSPVSSSFPSPSRYDGNPSSYLL 144
>K1718_MOUSE (Q3UWM4) Protein KIAA1718| Length = 940 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = -2 Query: 99 LHAVVSSQKCLCMGGCFLY 43 +HAV++SQ C+ GG FL+ Sbjct: 353 IHAVLTSQDCMAFGGNFLH 371
>K1718_HUMAN (Q6ZMT4) Protein KIAA1718| Length = 941 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = -2 Query: 99 LHAVVSSQKCLCMGGCFLY 43 +HAV++SQ C+ GG FL+ Sbjct: 353 IHAVLTSQDCMAFGGNFLH 371
>NUMBL_MOUSE (O08919) Numb-like protein| Length = 604 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +2 Query: 245 PAQHLPPLPCTSGSSPSEFDTDT 313 P QHL P PC + P F T++ Sbjct: 14 PDQHLSPAPCGASGPPETFRTES 36
>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced| PDZ-motif protein) (Protein cypher) (Protein oracle) Length = 723 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/36 (30%), Positives = 18/36 (50%) Frame = +2 Query: 188 SSVDDATTKPEPTFQYFPSPAQHLPPLPCTSGSSPS 295 +S+ + +P P Y PSP + P P T +P+ Sbjct: 397 ASIRPSVYQPVPASSYSPSPGANYSPTPYTPSPAPA 432
>HMCS1_MOUSE (Q8JZK9) Hydroxymethylglutaryl-CoA synthase, cytoplasmic (EC| 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 520 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +2 Query: 230 QYFPSPAQHLPPLPCTSGSSPS 295 ++ PSPA+ +P LP TS S S Sbjct: 491 EHIPSPAKKVPRLPATSAESES 512
>DEGS_ECOLI (P0AEE3) Protease degS precursor (EC 3.4.21.-)| Length = 355 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -1 Query: 259 QVLRRGREVLEGWLGLGRRVVDGGEVQLGVGEQRSPWEAHGGERHQLQGLAV 104 +++R GR V+ G++G+G G + +P A GG QLQG+ V Sbjct: 247 KLIRDGR-VIRGYIGIG-------------GREIAPLHAQGGGIDQLQGIVV 284
>DEGS_ECO57 (P0AEE4) Protease degS precursor (EC 3.4.21.-)| Length = 355 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -1 Query: 259 QVLRRGREVLEGWLGLGRRVVDGGEVQLGVGEQRSPWEAHGGERHQLQGLAV 104 +++R GR V+ G++G+G G + +P A GG QLQG+ V Sbjct: 247 KLIRDGR-VIRGYIGIG-------------GREIAPLHAQGGGIDQLQGIVV 284
>AMOL2_MOUSE (Q8K371) Angiomotin-like protein 2| Length = 772 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%) Frame = +2 Query: 227 FQYFPSPAQHLPPL-PCTSGSSP 292 +QY P P +H PPL P G P Sbjct: 261 YQYLPQPQEHSPPLHPAALGHGP 283
>RP1_HUMAN (P56715) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1| protein) (Retinitis pigmentosa 1 protein) Length = 2156 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/74 (21%), Positives = 28/74 (37%) Frame = -2 Query: 306 VSNSDGEEPEVHXXXXXXXXXXXKYWKVGSGLVVASSTEEKYSSASESSVLHGKLTEASA 127 ++N EE H + G+ + S K S+++HG L EA + Sbjct: 1847 IANHHTEEKGSHQSERVCTSVTHSFISAGNKVYPVSDDAIKNQPLPGSNMIHGTLQEADS 1906 Query: 126 INSKG*QCGLHAVV 85 ++ CG H + Sbjct: 1907 LDKLYALCGQHCPI 1920
>JIP4_MOUSE (Q58A65) C-jun-amino-terminal kinase-interacting protein 4| (JNK-interacting protein 4) (JIP-4) (JNK-associated leucine-zipper protein) (JLP) (Sperm-associated antigen 9) (Mitogen-activated protein kinase 8-interacting protein 4) (JNK/SAPK-asso Length = 1321 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Frame = +2 Query: 185 FSSVDDATTKPEPTFQY-FPSPAQHLPPLPCTSGSSPSEFDTDTS 316 FSS +AT KPEP + +P H+ P S+ S+ D S Sbjct: 560 FSSSSNATKKPEPPVNLKYNAPTSHVTPSVKKRSSTLSQLPGDKS 604
>PP2CD_HUMAN (O15297) Protein phosphatase 2C isoform delta (EC 3.1.3.16)| (PP2C-delta) (p53-induced protein phosphatase 1) (Protein phosphatase magnesium-dependent 1 delta) Length = 605 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%) Frame = +2 Query: 182 YFSSVDDATTKPEPTFQYFPSP----AQHLPPLP 271 Y V +PEPT + PSP +Q LPP P Sbjct: 20 YMEDVTQIVVEPEPTAEEKPSPRRSLSQPLPPRP 53
>SPR1A_MOUSE (Q62266) Cornifin A (Small proline-rich protein 1A) (SPR1A) (SPR1| A) Length = 144 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = +2 Query: 215 PEPTFQYFPSPAQHLPPLPCTSGSSPSEFDTDT 313 PEP P P + P PC S +PS + T Sbjct: 109 PEPCHPKAPEPCHPVVPEPCPSTVTPSPYQQKT 141
>SOCS1_HUMAN (O15524) Suppressor of cytokine signaling 1 (SOCS-1) (JAK-binding| protein) (JAB) (STAT-induced STAT inhibitor 1) (SSI-1) (Tec-interacting protein 3) (TIP-3) Length = 211 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +2 Query: 188 SSVDDATTKPEPTFQYFPSPAQHLPPLPCTSGSSPSEFDT 307 S+ + +PEP+ SPA P PC + +P+ DT Sbjct: 14 STAAEPRRRPEPSSSSSSSPAAPARPRPCPAVPAPAPGDT 53 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,227,566 Number of Sequences: 219361 Number of extensions: 812894 Number of successful extensions: 3398 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3118 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3389 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
