Clone Name | rbastl17g12 |
---|---|
Clone Library Name | barley_pub |
>gb|AC144485.2| Gasterosteus aculeatus clone CH213-101E8, complete sequence Length = 203829 Score = 44.1 bits (22), Expect = 0.046 Identities = 22/22 (100%) Strand = Plus / Plus Query: 24 taacgctagctagcaagatagt 45 |||||||||||||||||||||| Sbjct: 37032 taacgctagctagcaagatagt 37053
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 gtagataaatatttacatcag 64 ||||||||||||||||||||| Sbjct: 40693065 gtagataaatatttacatcag 40693045
>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0093F16 Length = 160925 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 gtagataaatatttacatcag 64 ||||||||||||||||||||| Sbjct: 135043 gtagataaatatttacatcag 135023
>dbj|AK072309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022C23, full insert sequence Length = 3151 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 gtagataaatatttacatcag 64 ||||||||||||||||||||| Sbjct: 2943 gtagataaatatttacatcag 2923
>emb|AL391807.13| Human DNA sequence from clone RP3-525N10 on chromosome 6 Contains the 5' end of the BAI3 gene for brain-specific angiogenesis inhibitor 3, a novel gene and a CpG island, complete sequence Length = 73228 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 agataaatatttacatcag 64 ||||||||||||||||||| Sbjct: 68595 agataaatatttacatcag 68613
>emb|AL356296.12| Human DNA sequence from clone RP11-340B1 on chromosome 13, complete sequence Length = 132589 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 tagcaagatagtagataaa 52 ||||||||||||||||||| Sbjct: 93409 tagcaagatagtagataaa 93427
>gb|AC107391.5| Homo sapiens BAC clone RP11-545D9 from 4, complete sequence Length = 103158 Score = 38.2 bits (19), Expect = 2.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 28 gctagctagcaagatagtagata 50 |||||||||| |||||||||||| Sbjct: 27842 gctagctagctagatagtagata 27820
>gb|AC073023.7| Homo sapiens chromosome 8, clone RP11-211F2, complete sequence Length = 171438 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 agctagcaagatagtagat 49 ||||||||||||||||||| Sbjct: 61891 agctagcaagatagtagat 61909
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 2.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 25 aacgctagctagcaagatagtag 47 ||||||||||||| ||||||||| Sbjct: 15437248 aacgctagctagctagatagtag 15437226
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 actaacgctagctagcaag 40 ||||||||||||||||||| Sbjct: 29493052 actaacgctagctagcaag 29493070
>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1038_A06 Length = 147836 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 actaacgctagctagcaag 40 ||||||||||||||||||| Sbjct: 88082 actaacgctagctagcaag 88100
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 38.2 bits (19), Expect = 2.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 25 aacgctagctagcaagatagtag 47 ||||||||||||| ||||||||| Sbjct: 86540 aacgctagctagctagatagtag 86518
>dbj|AP003695.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1976B1, complete sequence Length = 160082 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 agctagcaagatagtagat 49 ||||||||||||||||||| Sbjct: 24536 agctagcaagatagtagat 24554 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 697,224 Number of Sequences: 3902068 Number of extensions: 697224 Number of successful extensions: 49556 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49500 Number of HSP's gapped (non-prelim): 56 length of query: 72 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 51 effective length of database: 17,151,101,840 effective search space: 874706193840 effective search space used: 874706193840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)