ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC144485.2| Gasterosteus aculeatus clone CH213-101E8, complet... 44 0.046
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.18
3dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.18
4dbj|AK072309.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.18
5emb|AL391807.13| Human DNA sequence from clone RP3-525N10 on chr... 38 2.9
6emb|AL356296.12| Human DNA sequence from clone RP11-340B1 on chr... 38 2.9
7gb|AC107391.5| Homo sapiens BAC clone RP11-545D9 from 4, complet... 38 2.9
8gb|AC073023.7| Homo sapiens chromosome 8, clone RP11-211F2, comp... 38 2.9
9dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
11dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
12dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
13dbj|AP003695.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 2.9

>gb|AC144485.2| Gasterosteus aculeatus clone CH213-101E8, complete sequence
          Length = 203829

 Score = 44.1 bits (22), Expect = 0.046
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 24    taacgctagctagcaagatagt 45
             ||||||||||||||||||||||
Sbjct: 37032 taacgctagctagcaagatagt 37053



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 44       gtagataaatatttacatcag 64
                |||||||||||||||||||||
Sbjct: 40693065 gtagataaatatttacatcag 40693045



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>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0093F16
          Length = 160925

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 44     gtagataaatatttacatcag 64
              |||||||||||||||||||||
Sbjct: 135043 gtagataaatatttacatcag 135023



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>dbj|AK072309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022C23, full
            insert sequence
          Length = 3151

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 44   gtagataaatatttacatcag 64
            |||||||||||||||||||||
Sbjct: 2943 gtagataaatatttacatcag 2923



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>emb|AL391807.13| Human DNA sequence from clone RP3-525N10 on chromosome 6 Contains the
             5' end of the BAI3 gene for brain-specific angiogenesis
             inhibitor 3, a novel gene and a CpG island, complete
             sequence
          Length = 73228

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 46    agataaatatttacatcag 64
             |||||||||||||||||||
Sbjct: 68595 agataaatatttacatcag 68613



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>emb|AL356296.12| Human DNA sequence from clone RP11-340B1 on chromosome 13, complete
             sequence
          Length = 132589

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 34    tagcaagatagtagataaa 52
             |||||||||||||||||||
Sbjct: 93409 tagcaagatagtagataaa 93427



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>gb|AC107391.5| Homo sapiens BAC clone RP11-545D9 from 4, complete sequence
          Length = 103158

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 28    gctagctagcaagatagtagata 50
             |||||||||| ||||||||||||
Sbjct: 27842 gctagctagctagatagtagata 27820



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>gb|AC073023.7| Homo sapiens chromosome 8, clone RP11-211F2, complete sequence
          Length = 171438

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    agctagcaagatagtagat 49
             |||||||||||||||||||
Sbjct: 61891 agctagcaagatagtagat 61909



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 25       aacgctagctagcaagatagtag 47
                ||||||||||||| |||||||||
Sbjct: 15437248 aacgctagctagctagatagtag 15437226



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 22       actaacgctagctagcaag 40
                |||||||||||||||||||
Sbjct: 29493052 actaacgctagctagcaag 29493070



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>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1038_A06
          Length = 147836

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    actaacgctagctagcaag 40
             |||||||||||||||||||
Sbjct: 88082 actaacgctagctagcaag 88100



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>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1299_A11
          Length = 160099

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 25    aacgctagctagcaagatagtag 47
             ||||||||||||| |||||||||
Sbjct: 86540 aacgctagctagctagatagtag 86518



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>dbj|AP003695.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1976B1, complete
             sequence
          Length = 160082

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    agctagcaagatagtagat 49
             |||||||||||||||||||
Sbjct: 24536 agctagcaagatagtagat 24554


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 697,224
Number of Sequences: 3902068
Number of extensions: 697224
Number of successful extensions: 49556
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49500
Number of HSP's gapped (non-prelim): 56
length of query: 72
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 51
effective length of database: 17,151,101,840
effective search space: 874706193840
effective search space used: 874706193840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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