ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CR450841.7| Zebrafish DNA sequence from clone DKEY-16N9 in l... 40 0.20
2emb|BX664610.10| Zebrafish DNA sequence from clone DKEY-11N6 in ... 40 0.20
3gb|AC120348.9| Mus musculus chromosome 5, clone RP23-55P22, comp... 38 0.78
4ref|XM_761848.1| Giardia lamblia ATCC 50803 hypothetical protein... 38 0.78
5ref|XM_763066.1| Giardia lamblia ATCC 50803 hypothetical protein... 38 0.78
6gb|AC019028.13| Mus musculus chromosome 5, clone RP23-88A22, com... 38 0.78
7gb|AE014212.1| Streptococcus agalactiae 2603V/R section 22 of 10... 38 0.78
8emb|AL954721.4| Zebrafish DNA sequence from clone BUSM1-119J18 i... 38 0.78
9gb|AC095057.3| Homo sapiens BAC clone RP11-395I6 from 4, complet... 38 0.78
10gb|AC068702.7| Homo sapiens BAC clone RP11-81H10 from 2, complet... 38 0.78
11emb|BX293564.5| Zebrafish DNA sequence from clone DKEYP-7F8 in l... 38 0.78
12emb|CT030637.9| Mouse DNA sequence from clone RP23-123H11 on chr... 38 0.78
13gb|AC161800.8| Mus musculus chromosome 7, clone RP23-340E19, com... 36 3.1
14gb|AC121601.4| Mus musculus BAC clone RP23-305F2 from 1, complet... 36 3.1
15ref|XM_649541.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 36 3.1
16emb|AL645820.1| Human DNA sequence from clone RP1-138O17 on chro... 36 3.1
17emb|AL138768.23| Human DNA sequence from clone RP11-8L18 on chro... 36 3.1
18emb|BX465208.18| Zebrafish DNA sequence from clone DKEYP-91H6 in... 36 3.1
19gb|AC089982.15| Homo sapiens 12 BAC RP11-25I15 (Roswell Park Can... 36 3.1
20gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, ... 36 3.1
21emb|CR376753.8| Zebrafish DNA sequence from clone DKEY-182P15 in... 36 3.1
22gb|AC104691.2| Homo sapiens BAC clone RP11-186E11 from 4, comple... 36 3.1
23gb|AC105998.4| Homo sapiens chromosome 8, clone CTC-877B12, comp... 36 3.1
24gb|AC007196.5| Arabidopsis thaliana chromosome 2 clone T18C20 ma... 36 3.1
25gb|AC007167.5| Arabidopsis thaliana chromosome 2 clone F3C11 map... 36 3.1
26gb|AC008872.6| Homo sapiens chromosome 5 clone CTD-2198D21, comp... 36 3.1
27gb|AF001905.1|AF001905 Homo sapiens cosmids E079, B0920 and A8 f... 36 3.1
28gb|AC019176.4|AC019176 Homo sapiens BAC clone RP11-221H10 from 8... 36 3.1
29gb|AF463520.1| Homo sapiens lung cancer cell deletion region 36 3.1
30emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 36 3.1
31gb|AC157977.1| Genomic sequence for Zea mays chromosome 8 BAC cl... 36 3.1
32gb|AC157487.1| Genomic sequence for Zea mays clone ZMMBBb0614J24... 36 3.1
33emb|AL161662.6|CNS01RH6 Human chromosome 14 DNA sequence BAC R-4... 36 3.1
34emb|AL355074.5|CNS05TC8 Human chromosome 14 DNA sequence BAC R-7... 36 3.1
35emb|AL590444.1|CNS07EGB chromosome IV of strain GB-M1 of Encepha... 36 3.1
36gb|AC102003.5| Mus musculus chromosome 7, clone RP24-488I10, com... 36 3.1
37emb|Z72519.1|HSJ13817A Human DNA sequence from cosmid J138O17, b... 36 3.1
38gb|AY067040.1| Schmidtea mediterranea clone H.121.2f unknown mRN... 36 3.1
39gb|AY066596.1| Schmidtea mediterranea clone H.107.8b unknown mRN... 36 3.1 
>emb|CR450841.7| Zebrafish DNA sequence from clone DKEY-16N9 in linkage group 11, complete
              sequence
          Length = 263287

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      cagagcctttccaaaacatt 28
              ||||||||||||||||||||
Sbjct: 146376 cagagcctttccaaaacatt 146395
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>emb|BX664610.10| Zebrafish DNA sequence from clone DKEY-11N6 in linkage group 22,
             complete sequence
          Length = 206964

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    ctttccaaaacatttattat 34
             ||||||||||||||||||||
Sbjct: 31340 ctttccaaaacatttattat 31359
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>gb|AC120348.9| Mus musculus chromosome 5, clone RP23-55P22, complete sequence
          Length = 244565

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 14     cctttccaaaacatttatt 32
              |||||||||||||||||||
Sbjct: 129047 cctttccaaaacatttatt 129065
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>ref|XM_761848.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_382_17794_18123) partial mRNA
          Length = 330

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 8   acagagcctttccaaaacattta 30
           |||||||||||||| ||||||||
Sbjct: 234 acagagcctttccataacattta 212
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>ref|XM_763066.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_618_1325_996)
           partial mRNA
          Length = 330

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 8   acagagcctttccaaaacattta 30
           |||||||||||||| ||||||||
Sbjct: 234 acagagcctttccataacattta 212
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>gb|AC019028.13| Mus musculus chromosome 5, clone RP23-88A22, complete sequence
          Length = 264425

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 14     cctttccaaaacatttatt 32
              |||||||||||||||||||
Sbjct: 223835 cctttccaaaacatttatt 223817
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>gb|AE014212.1| Streptococcus agalactiae 2603V/R section 22 of 100 of the complete
            genome
          Length = 20965

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 15   ctttccaaaacatttatta 33
            |||||||||||||||||||
Sbjct: 1839 ctttccaaaacatttatta 1857
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>emb|AL954721.4| Zebrafish DNA sequence from clone BUSM1-119J18 in linkage group 20
             Contains a novel gene for a protein with helix-loop-helix
             DNA-binding domain, a novel gene similar to rat KIDINS220
             (kinase D-interacting substance of 220 kDa) and two CpG
             islands, complete sequence
          Length = 95798

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    tttccaaaacatttattat 34
             |||||||||||||||||||
Sbjct: 32175 tttccaaaacatttattat 32157
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>gb|AC095057.3| Homo sapiens BAC clone RP11-395I6 from 4, complete sequence
          Length = 163527

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 14     cctttccaaaacatttatt 32
              |||||||||||||||||||
Sbjct: 113762 cctttccaaaacatttatt 113744
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>gb|AC068702.7| Homo sapiens BAC clone RP11-81H10 from 2, complete sequence
          Length = 177519

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 16    tttccaaaacatttattat 34
             |||||||||||||||||||
Sbjct: 89007 tttccaaaacatttattat 89025
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>emb|BX293564.5| Zebrafish DNA sequence from clone DKEYP-7F8 in linkage group 20,
             complete sequence
          Length = 145495

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    tttccaaaacatttattat 34
             |||||||||||||||||||
Sbjct: 85910 tttccaaaacatttattat 85892
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>emb|CT030637.9| Mouse DNA sequence from clone RP23-123H11 on chromosome 14, complete
             sequence
          Length = 239552

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    tttccaaaacatttattat 34
             |||||||||||||||||||
Sbjct: 16727 tttccaaaacatttattat 16709
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>gb|AC161800.8| Mus musculus chromosome 7, clone RP23-340E19, complete sequence
          Length = 201173

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 16     tttccaaaacatttatta 33
              ||||||||||||||||||
Sbjct: 112809 tttccaaaacatttatta 112792
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>gb|AC121601.4| Mus musculus BAC clone RP23-305F2 from 1, complete sequence
          Length = 190653

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 17     ttccaaaacatttattat 34
              ||||||||||||||||||
Sbjct: 109225 ttccaaaacatttattat 109242
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>ref|XM_649541.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (48.t00012)
            partial mRNA
          Length = 4815

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 17   ttccaaaacatttattat 34
            ||||||||||||||||||
Sbjct: 1391 ttccaaaacatttattat 1408
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>emb|AL645820.1| Human DNA sequence from clone RP1-138O17 on chromosome X, complete
             sequence
          Length = 125787

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 16    tttccaaaacatttatta 33
             ||||||||||||||||||
Sbjct: 41531 tttccaaaacatttatta 41548
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>emb|AL138768.23| Human DNA sequence from clone RP11-8L18 on chromosome 10 Contains part
             of the PARD3 gene for par-3 partitioning defective 3
             homolog (C.elegans), a 40S ribosomal protein S12 (RPS12)
             pseudogene and a 60S ribosomal protein L37 (RPL37)
             pseudogene, complete sequence
          Length = 176405

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 16    tttccaaaacatttatta 33
             ||||||||||||||||||
Sbjct: 71126 tttccaaaacatttatta 71143
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>emb|BX465208.18| Zebrafish DNA sequence from clone DKEYP-91H6 in linkage group 6,
             complete sequence
          Length = 187635

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    ttccaaaacatttattat 34
             ||||||||||||||||||
Sbjct: 87451 ttccaaaacatttattat 87434
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>gb|AC089982.15| Homo sapiens 12 BAC RP11-25I15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 173877

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 9     cagagcctttccaaaaca 26
             ||||||||||||||||||
Sbjct: 37711 cagagcctttccaaaaca 37694
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>gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, RP23-348F2, Complete
             Sequence, complete sequence
          Length = 194881

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 7     aacagagcctttccaaaa 24
             ||||||||||||||||||
Sbjct: 79472 aacagagcctttccaaaa 79455
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>emb|CR376753.8| Zebrafish DNA sequence from clone DKEY-182P15 in linkage group 20,
             complete sequence
          Length = 214807

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    ttccaaaacatttattat 34
             ||||||||||||||||||
Sbjct: 71132 ttccaaaacatttattat 71115
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>gb|AC104691.2| Homo sapiens BAC clone RP11-186E11 from 4, complete sequence
          Length = 118631

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 16    tttccaaaacatttatta 33
             ||||||||||||||||||
Sbjct: 71711 tttccaaaacatttatta 71694
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>gb|AC105998.4| Homo sapiens chromosome 8, clone CTC-877B12, complete sequence
          Length = 76970

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 3     ttagaacagagcctttcc 20
             ||||||||||||||||||
Sbjct: 55544 ttagaacagagcctttcc 55561
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>gb|AC007196.5| Arabidopsis thaliana chromosome 2 clone T18C20 map RNS1, complete
             sequence
          Length = 35137

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 17    ttccaaaacatttattat 34
             ||||||||||||||||||
Sbjct: 33219 ttccaaaacatttattat 33236
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>gb|AC007167.5| Arabidopsis thaliana chromosome 2 clone F3C11 map mi310, complete
            sequence
          Length = 103874

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 17   ttccaaaacatttattat 34
            ||||||||||||||||||
Sbjct: 3705 ttccaaaacatttattat 3722
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>gb|AC008872.6| Homo sapiens chromosome 5 clone CTD-2198D21, complete sequence
          Length = 128703

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 5    agaacagagcctttccaa 22
            ||||||||||||||||||
Sbjct: 3929 agaacagagcctttccaa 3912
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>gb|AF001905.1|AF001905 Homo sapiens cosmids E079, B0920 and A8 from Xq25 X-linked
             lymphoproliferative disease gene candidate region,
             complete sequence
          Length = 197620

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 16    tttccaaaacatttatta 33
             ||||||||||||||||||
Sbjct: 84257 tttccaaaacatttatta 84240
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>gb|AC019176.4|AC019176 Homo sapiens BAC clone RP11-221H10 from 8, complete sequence
          Length = 170680

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 3     ttagaacagagcctttcc 20
             ||||||||||||||||||
Sbjct: 27914 ttagaacagagcctttcc 27931
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>gb|AF463520.1| Homo sapiens lung cancer cell deletion region
          Length = 7671

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 5   agaacagagcctttccaa 22
           ||||||||||||||||||
Sbjct: 998 agaacagagcctttccaa 981
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>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 6      gaacagagcctttccaaa 23
              ||||||||||||||||||
Sbjct: 941115 gaacagagcctttccaaa 941098
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>gb|AC157977.1| Genomic sequence for Zea mays chromosome 8 BAC clone ZMMBBb0284N04,
              complete sequence
          Length = 107631

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 14     cctttccaaaacatttat 31
              ||||||||||||||||||
Sbjct: 105812 cctttccaaaacatttat 105829
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>gb|AC157487.1| Genomic sequence for Zea mays clone ZMMBBb0614J24, from chromosome 8,
             complete sequence
          Length = 136932

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    cctttccaaaacatttat 31
             ||||||||||||||||||
Sbjct: 22595 cctttccaaaacatttat 22612
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>emb|AL161662.6|CNS01RH6 Human chromosome 14 DNA sequence BAC R-439L12 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 197369

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 12   agcctttccaaaacattt 29
            ||||||||||||||||||
Sbjct: 3276 agcctttccaaaacattt 3259
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>emb|AL355074.5|CNS05TC8 Human chromosome 14 DNA sequence BAC R-750I4 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 183672

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 12    agcctttccaaaacattt 29
             ||||||||||||||||||
Sbjct: 99663 agcctttccaaaacattt 99646
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>emb|AL590444.1|CNS07EGB chromosome IV of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 218329

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 5     agaacagagcctttccaa 22
             ||||||||||||||||||
Sbjct: 83413 agaacagagcctttccaa 83396
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>gb|AC102003.5| Mus musculus chromosome 7, clone RP24-488I10, complete sequence
          Length = 150428

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 16    tttccaaaacatttatta 33
             ||||||||||||||||||
Sbjct: 14658 tttccaaaacatttatta 14675
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>emb|Z72519.1|HSJ13817A Human DNA sequence from cosmid J138O17, between markers DXS6791 and
             DXS8038 on chromosome X contains EST CA repeat and an
             endogenous retroviral like element
          Length = 125787

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 16    tttccaaaacatttatta 33
             ||||||||||||||||||
Sbjct: 84257 tttccaaaacatttatta 84240
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>gb|AY067040.1| Schmidtea mediterranea clone H.121.2f unknown mRNA sequence
          Length = 902

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 15  ctttccaaaacatttatt 32
           ||||||||||||||||||
Sbjct: 90  ctttccaaaacatttatt 107
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>gb|AY066596.1| Schmidtea mediterranea clone H.107.8b unknown mRNA sequence
          Length = 633

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 15  ctttccaaaacatttatt 32
           ||||||||||||||||||
Sbjct: 502 ctttccaaaacatttatt 519


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 481,603
Number of Sequences: 3902068
Number of extensions: 481603
Number of successful extensions: 137833
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137722
Number of HSP's gapped (non-prelim): 111
length of query: 34
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 14
effective length of database: 17,155,003,908
effective search space: 240170054712
effective search space used: 240170054712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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