ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TAGC_DICDI (Q23868) Prestalk-specific protein tagC precursor (EC... 27 9.3
2TRI38_HUMAN (O00635) Tripartite motif protein 38 (RING finger pr... 27 9.3

>TAGC_DICDI (Q23868) Prestalk-specific protein tagC precursor (EC 3.4.21.-)|
          Length = 1743

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 220 ISPVILHVLSSRNQRN*NNG 279
           ISP++L +L++ N  N NNG
Sbjct: 85  ISPILLRILNNNNNNNNNNG 104



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>TRI38_HUMAN (O00635) Tripartite motif protein 38 (RING finger protein 15) (Zinc|
           finger protein RoRet)
          Length = 465

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 40  CYNCERARNNRAHTMATAEQV 102
           C+ CERA  ++ HT A  E V
Sbjct: 112 CWRCERAPQHKGHTTALVEDV 132


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,949,290
Number of Sequences: 219361
Number of extensions: 1167759
Number of successful extensions: 1888
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1888
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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