>RL35_SHIFL (P0A7Q5) 50S ribosomal protein L35|
          Length = 64

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 232 PHLALVRGAARQTKPNQTGGVQHTHT---HILEPQNRTQARSGHPE 360
           P +  VRGAA++ K    GG +H H    HIL  +   + R   P+
Sbjct: 1   PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPK 46

>RL35_SALTY (P0A7Q3) 50S ribosomal protein L35|
          Length = 64

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 232 PHLALVRGAARQTKPNQTGGVQHTHT---HILEPQNRTQARSGHPE 360
           P +  VRGAA++ K    GG +H H    HIL  +   + R   P+
Sbjct: 1   PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPK 46

>RL35_SALTI (P0A7Q4) 50S ribosomal protein L35|
          Length = 64

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 232 PHLALVRGAARQTKPNQTGGVQHTHT---HILEPQNRTQARSGHPE 360
           P +  VRGAA++ K    GG +H H    HIL  +   + R   P+
Sbjct: 1   PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPK 46

>RL35_ECOLI (P0A7Q1) 50S ribosomal protein L35 (Ribosomal protein A)|
          Length = 64

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 232 PHLALVRGAARQTKPNQTGGVQHTHT---HILEPQNRTQARSGHPE 360
           P +  VRGAA++ K    GG +H H    HIL  +   + R   P+
Sbjct: 1   PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPK 46

>RL35_ECO57 (P0A7Q2) 50S ribosomal protein L35|
          Length = 64

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 232 PHLALVRGAARQTKPNQTGGVQHTHT---HILEPQNRTQARSGHPE 360
           P +  VRGAA++ K    GG +H H    HIL  +   + R   P+
Sbjct: 1   PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPK 46

>SPEE_COREF (Q8FMF7) Probable spermidine synthase (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase) (SPDSY)
          Length = 519

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -3

Query: 331 GFAVQGYVYVYVELPRFGLVWFGVLLRVQERGVVDLLKGRFRVCIMVRRA*FLPRA 164
           G  + G  + ++ LP     W G++      G+++LL   F  C+++R    LPRA
Sbjct: 159 GALLGGLAWPFILLP-----WLGMMRGAAAAGMINLLAALFVGCVLLRH--LLPRA 207

>GLI1_XENLA (Q91690) Zinc finger protein GLI1 (GLI-1) (Fragment)|
          Length = 1360

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +2

Query: 155  ASSSPWQKSSTPDHDTHTESTF*QINHTSLLYAEQHAKPNQTKPGEFNIHIHISLNR 325
            + SSP + +  P     +E T    N+TS++Y     + +Q+KPG   +   ++LN+
Sbjct: 1197 SESSPRRMACLPPIQPQSEVT----NNTSMMYYTGQMEMHQSKPGVHKLTTPLNLNQ 1249

>GSPB_DICD3 (Q01563) General secretion pathway protein B|
          Length = 220

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 361 SPGVLTWPAFGFAVQGYVYVYVELPRFGLVWFG 263
           +P V   P  G+ + GY+ V   L  F L WFG
Sbjct: 4   TPEVKASPQTGYRIPGYLLVVYALLLFTLGWFG 36

>AT11A_MOUSE (P98197) Probable phospholipid-transporting ATPase IH (EC 3.6.3.1)|
            (ATPase class I type 11A) (ATPase IS)
          Length = 1187

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 355  GVLTWPAFGFAVQGYVYVYVELPRFGLVWFGVLLRVQERGVVDLLK 218
            G + WP   +  Q   YV++ +   G  W G++L V    + D+LK
Sbjct: 1053 GGVIWPFLSY--QRMYYVFISMLSSGPAWLGIILLVTVGLLPDVLK 1096

>HD_FUGRU (P51112) Huntingtin (Huntington disease protein homolog) (HD protein)|
          Length = 3148

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 146  LMIASSSP--WQKSSTPDHDTHTESTF*QINHTSLLYA 253
            L +A   P  W K STP+++THT S    ++H  L  A
Sbjct: 2285 LCLALQQPCVWNKLSTPEYNTHTCSLIYCLHHIILAVA 2322

>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)|
           (Helicase-like protein NHL)
          Length = 1400

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 242 LLYAEQHAKPNQTKPGEFNIHIHISLNRKTERRPGQDTR 358
           LL A +H++     PGE   H   +L+  +E+RP ++ R
Sbjct: 834 LLAALEHSEQRAGSPGEEQAHSCSTLSLLSEKRPAEEPR 872

>PUR9_RHOBA (Q7UKJ8) Bifunctional purine biosynthesis protein purH [Includes:|
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)]
          Length = 523

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 287 GEFNIHIHISLNRKTERRPGQD 352
           GEF   +H+SL RKT+ R G++
Sbjct: 202 GEFPASMHVSLRRKTQLRYGEN 223


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,848,877
Number of Sequences: 219361
Number of extensions: 1026549
Number of successful extensions: 2184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2182
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)