ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC009535.9| Drosophila melanogaster, chromosome 2R, region 54... 38 2.0
2gb|AE003803.4| Drosophila melanogaster chromosome 2R, section 47... 38 2.0
3gb|AC154044.2| Drosophila melanogaster clone BACR32E02, complete... 36 8.0
4gb|AC154051.2| Drosophila melanogaster clone BACR17E02, complete... 36 8.0
5gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 36 8.0
6ref|XM_414540.1| PREDICTED: Gallus gallus similar to Vesicular i... 36 8.0
7dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 36 8.0
8gb|AC099310.1| Drosophila melanogaster, chromosome 3R, region 94... 36 8.0
9gb|AE003740.3| Drosophila melanogaster chromosome 3R, section 78... 36 8.0
10gb|AE003428.4| Drosophila melanogaster chromosome X, section 12 ... 36 8.0

>gb|AC009535.9| Drosophila melanogaster, chromosome 2R, region 54B-54B, BAC clone
             BACR28O12, complete sequence
          Length = 161244

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 6     catttttattcggcaacat 24
             |||||||||||||||||||
Sbjct: 61397 catttttattcggcaacat 61415



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>gb|AE003803.4| Drosophila melanogaster chromosome 2R, section 47 of 73 of the complete
             sequence
          Length = 290783

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 6     catttttattcggcaacat 24
             |||||||||||||||||||
Sbjct: 81415 catttttattcggcaacat 81433



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>gb|AC154044.2| Drosophila melanogaster clone BACR32E02, complete sequence
          Length = 186002

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 8      tttttattcggcaacatc 25
              ||||||||||||||||||
Sbjct: 182126 tttttattcggcaacatc 182143



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>gb|AC154051.2| Drosophila melanogaster clone BACR17E02, complete sequence
          Length = 168158

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 8      tttttattcggcaacatc 25
              ||||||||||||||||||
Sbjct: 110722 tttttattcggcaacatc 110739



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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 18      gcaacatctgggcgcata 35
               ||||||||||||||||||
Sbjct: 1700624 gcaacatctgggcgcata 1700641



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>ref|XM_414540.1| PREDICTED: Gallus gallus similar to Vesicular integral-membrane
           protein VIP36 precursor (Lectin, mannose-binding 2)
           (LOC416217), mRNA
          Length = 1209

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 27  gggcgcatacatggggca 44
           ||||||||||||||||||
Sbjct: 810 gggcgcatacatggggca 793



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>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102
          Length = 1779707

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 20     aacatctgggcgcataca 37
              ||||||||||||||||||
Sbjct: 798865 aacatctgggcgcataca 798848



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>gb|AC099310.1| Drosophila melanogaster, chromosome 3R, region 94D-94D, BAC clone
             BACR05G05, complete sequence
          Length = 163979

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 8     tttttattcggcaacatc 25
             ||||||||||||||||||
Sbjct: 78244 tttttattcggcaacatc 78227



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>gb|AE003740.3| Drosophila melanogaster chromosome 3R, section 78 of 118 of the complete
              sequence
          Length = 234378

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 8      tttttattcggcaacatc 25
              ||||||||||||||||||
Sbjct: 193253 tttttattcggcaacatc 193270



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>gb|AE003428.4| Drosophila melanogaster chromosome X, section 12 of 74 of the
            complete sequence
          Length = 203546

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 8    tttttattcggcaacatc 25
            ||||||||||||||||||
Sbjct: 8219 tttttattcggcaacatc 8202


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 379,350
Number of Sequences: 3902068
Number of extensions: 379350
Number of successful extensions: 90784
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90736
Number of HSP's gapped (non-prelim): 48
length of query: 56
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 36
effective length of database: 17,155,003,908
effective search space: 617580140688
effective search space used: 617580140688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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