>ASHH2_ARATH (Q2LAE1) Histone-lysine N-methyltransferase, H3 lysine-4 and H3|
            lysine-36 specific ASHH2 (EC 2.1.1.43) (H3-K4-HMTase)
            (H3-K36-HMTase) (Histone H3-K36 methyltransferase 8)
            (ASH1-homolog protein 2) (Protein EARLY FLOWERING IN
            SHORT DAYS) (Prote
          Length = 1759

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 47/89 (52%), Positives = 56/89 (62%)
 Frame = -2

Query: 385  EARLNNLLDRDGGITRRKDSANEYLKLLAFVIPAAHDNTTEERENAATPAERDKAGGTSK 206
            E +LN LLD  GGI++R+DSA  YLKLL  ++ AA   T EE                  
Sbjct: 1376 EGKLNELLDAVGGISKRRDSAKGYLKLL--LLTAASRGTDEEG---------------IY 1418

Query: 205  SARDLSLILDALLKTKSRSVLLDIINMNG 119
            S RDLS+ILDALLKTKS+SVL+DIIN NG
Sbjct: 1419 SNRDLSMILDALLKTKSKSVLVDIINKNG 1447

>PDLI2_MACFA (Q9GKU1) PDZ and LIM domain protein 2|
          Length = 352

 Score = 34.3 bits (77), Expect = 0.074
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
 Frame = +3

Query: 165 FRSASRINERSLALLDVPPALSRSAGVAAFSRSSVVLSCAAGITNARSFKYS-------- 320
           + S + ++ R+ +    PP  S  AG AA SRS   L+C+ G+  A    YS        
Sbjct: 122 YSSPTSLSPRAGSPFSPPPFSSPLAGEAAISRSFQSLACSPGLPAADRLSYSGRPGSQQA 181

Query: 321 ----FAESFRLVIPPS---RSSR 368
                 +S  LV+PPS   RSSR
Sbjct: 182 GLGRAGDSAVLVLPPSPGPRSSR 204

>PDLI2_HUMAN (Q96JY6) PDZ and LIM domain protein 2 (PDZ-LIM protein mystique)|
           (PDZ-LIM protein)
          Length = 352

 Score = 34.3 bits (77), Expect = 0.074
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
 Frame = +3

Query: 165 FRSASRINERSLALLDVPPALSRSAGVAAFSRSSVVLSCAAGITNARSFKYS-------- 320
           + S + ++ R+ +    PP+ S   G AA SRS   L+C+ G+  A    YS        
Sbjct: 122 YSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQA 181

Query: 321 ----FAESFRLVIPPS---RSSR 368
                 +S  LV+PPS   RSSR
Sbjct: 182 GLGRAGDSAVLVLPPSPGPRSSR 204

>COAE_AGRT5 (Q8UJC4) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A|
           kinase)
          Length = 194

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 26/71 (36%), Positives = 36/71 (50%)
 Frame = +3

Query: 93  FNIL*SIWNPFMLMISNRTERDFVFRSASRINERSLALLDVPPALSRSAGVAAFSRSSVV 272
           FN L  I +P   ++ NR E    F + +RI++R+ ALLD+P  L    G        VV
Sbjct: 77  FNRLEEIVHP---LVRNRQE---AFLAKARIDDRAFALLDIP--LLFETGAEGRVDKVVV 128

Query: 273 LSCAAGITNAR 305
           +SCA  I   R
Sbjct: 129 VSCAPEIQRER 139

>COAA_HAEIN (P44793) Pantothenate kinase (EC 2.7.1.33) (Pantothenic acid|
           kinase)
          Length = 311

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = -2

Query: 259 RENAATPAERDKAGGTSKSARDLSLILDALLKTKSRSVLLDIINMNGFQMLHNILKQNRD 80
           R NA TP     AG  +      + IL +LL        +D+I  +GF    N LKQ  D
Sbjct: 80  RNNAKTPYIISIAGSVAVGKSTSARILQSLLSHWPTERKVDLITTDGFLYPLNKLKQ--D 137

Query: 79  TFLRR---PIIRKLLKVLEFLA 23
             L++   P+     K++ FLA
Sbjct: 138 NLLQKKGFPVSYDTPKLIRFLA 159

>Y3348_STRCO (Q9X8H1) Hypothetical protein SCO3348|
          Length = 309

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = -2

Query: 388 VEARLNNLLDRDGGITRRKDSANEYLKLLAFVIPAAHDNTTEERENAATPAERDKAGGTS 209
           VE RL  LLD DG I    D  ++   ++   + AA D   E+    AT A R+ +    
Sbjct: 34  VELRLAQLLDEDGAI--GPDGVDQLAAVVREALQAAEDKGVEDLLPFATSAVREASNADD 91

Query: 208 KSAR 197
             AR
Sbjct: 92  VLAR 95

>NALP2_HUMAN (Q9NX02) NACHT-, LRR- and PYD-containing protein 2 (PYRIN domain- and|
            NACHT domain-containing protein 1) (PYRIN-containing
            APAF1-like protein 2) (Nucleotide-binding site protein 1)
          Length = 1062

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +2

Query: 188  RKIPCTFRCTPSLVTFCWGCSIFPF----LCSIVMC 283
            RK  C  RC      + WGCSI PF    LCS + C
Sbjct: 950  RKPLCNLRCL-----WLWGCSIPPFSCEDLCSALSC 980

>DP87_DICDI (Q04503) Prespore protein DP87 precursor|
          Length = 555

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
 Frame = +2

Query: 209 RCTPSLVTF-------CWGCSIFPFLCSIVMCRWDHKCKKLQ 313
           RC P    F       C   ++FP LC +  C  D  CK ++
Sbjct: 337 RCPPGSSCFNSRNGPHCLANNVFPQLCKVTQCPTDFSCKMIR 378

>CFT1_YEAST (Q06632) Protein CFT1 (Cleavage factor two protein 1)|
          Length = 1357

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
 Frame = -3

Query: 372 TTYWIEMEVLPDEKIQQMNI*SFLHL*SQRHMTILQRNGKMLQ----PQ------QNVTR 223
           +TY +  E++PD  I+Q+ I    H   + ++TIL   G++ Q    PQ      +NVTR
Sbjct: 768 STYQLGDEIVPDPSIKQVMINKLGHDNKEEYLTILTFGGEIYQYRKLPQRRSRFYRNVTR 827

>RAD54_SCHPO (P41410) DNA repair protein rhp54 (EC 3.6.1.-) (RAD54 homolog 1)|
          Length = 852

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 19/127 (14%)
 Frame = -2

Query: 334 KDSANEYLKLLAFVIPAAHDNTTEERENAATP---------AERDKAGGTSKSARDLSLI 182
           ++  +EY  LL F  P    +  E R+N   P          E+DK  G +K A +L+ I
Sbjct: 443 QNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKENGDAKLA-ELAKI 501

Query: 181 LDALLKTKSRSVLLDII----------NMNGFQMLHNILKQNRDTFLRRPIIRKLLKVLE 32
           ++  +  ++  +L   +          N++ FQ+  ++ K     F+  P I K+L+   
Sbjct: 502 VNRFIIRRTNDILSKYLPVKYEHVVFCNLSEFQL--SLYKH----FITSPEINKILRGTG 555

Query: 31  FLALKGI 11
              LK I
Sbjct: 556 SQPLKAI 562

>RPOD_MYCTU (P0A602) RNA polymerase sigma factor rpoD (Sigma-A)|
          Length = 528

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -2

Query: 361 DRDGGITRRKDSANEYLKLLAFVIPAAHDNTTEERENAATPAERDKAGG 215
           D D  +    D  +E L+  A V P     T ++ E  A P E+DKA G
Sbjct: 155 DADDDLDSGDDEDHEDLEAEAAVAPG---QTADDDEEIAEPTEKDKASG 200

>RPOD_MYCBO (P0A603) RNA polymerase sigma factor rpoD (Sigma-A)|
          Length = 528

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -2

Query: 361 DRDGGITRRKDSANEYLKLLAFVIPAAHDNTTEERENAATPAERDKAGG 215
           D D  +    D  +E L+  A V P     T ++ E  A P E+DKA G
Sbjct: 155 DADDDLDSGDDEDHEDLEAEAAVAPG---QTADDDEEIAEPTEKDKASG 200

>Y1542_METJA (Q58937) Hypothetical protein MJ1542|
          Length = 808

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 6   LRIPFKARNSNTFRSFRIIGLRRKVSRFCF-NIL*SIWNPFMLMISNRTERDFVFRSASR 182
           L  P+   N N F +FR    ++     C  +I+  +   F  +I +RT R  +   A  
Sbjct: 532 LHSPYFINNENIFNTFRFYKPKKSTKYICIGSIIKDLEKTFGTVILDRTTRKILLSDA-- 589

Query: 183 INERSLALLDVP 218
           +   S AL D+P
Sbjct: 590 VILLSSALRDIP 601

>SLMA_VIBF1 (Q5E8M7) HTH-type protein slmA|
          Length = 196

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
 Frame = -2

Query: 340 RRKDSANEYLKLLAFVIPAAHDNTTEERENAA--TPAERDKAGGTSKSARDLSLILDALL 167
           R+ +  +E L+ LA ++        E  E AA  T A+  K  G S++A    L      
Sbjct: 5   RKPNRRDEILQALAEML--------ESNEGAARITTAKLAKQVGVSEAA----LYRHFPS 52

Query: 166 KTKSRSVLLDIINMNGFQMLHNILKQNRDTFLRRPIIRKLL 44
           K K    L++ I  + F  ++ IL+  +DT  R  ++ KLL
Sbjct: 53  KAKMFEGLIEFIEDSIFSRVNRILEDEKDTLKRIELLLKLL 93

>PEN3_ADEP3 (Q84176) Penton protein (Virion component III) (Penton base|
           protein) (pIII)
          Length = 484

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -2

Query: 382 ARLNNLLDRDGGITRRKDSANEYLKLLAFVIPAAHDNTTEERENAAT--PAERDKAG 218
           +RLNNLL        ++     Y  L    IPA  D TT ++EN++T  P ++D  G
Sbjct: 242 SRLNNLLGIRKRYPYQEGFMLTYEDLAGGNIPALLDLTTYDQENSSTIKPLKQDSKG 298

>PCHA_PSEAE (Q51508) Salicylate biosynthesis isochorismate synthase (EC|
           5.4.4.2) (Isochorismate mutase)
          Length = 476

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 188 RKIPCTFRCTPSLVTFCWGCSI 253
           R+ PC +   P L  F WGC++
Sbjct: 55  RQTPCLYWEQPELAFFAWGCAL 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,578,322
Number of Sequences: 219361
Number of extensions: 1106164
Number of successful extensions: 2778
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2777
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)