ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466188.1| Oryza sativa (japonica cultivar-group), mRNA 165 1e-37
2ref|XM_466187.1| Oryza sativa (japonica cultivar-group), mRNA 165 1e-37
3dbj|AK106534.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 1e-37
4dbj|AK064575.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 1e-37
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 100 7e-18
6dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic D... 100 7e-18
7ref|XM_429174.1| PREDICTED: Gallus gallus similar to Zinc finger... 46 0.084
8emb|BX929999.1| Gallus gallus finished cDNA, clone ChEST764c6 46 0.084
9emb|CR925757.8| Zebrafish DNA sequence from clone CH211-208H16 i... 44 0.33
10dbj|AK221916.1| Arabidopsis thaliana mRNA for hypothetical prote... 44 0.33
11gb|AC164620.5| Mus musculus BAC clone RP23-64H20 from chromosome... 42 1.3
12gb|AC109291.12| Mus musculus chromosome 18, clone RP24-231C23, c... 42 1.3
13gb|AC126752.2| Homo sapiens chromosome 5 clone CTD-2322H6, compl... 42 1.3
14dbj|AB179062.1| Macaca fascicularis testis cDNA clone: QtsA-1239... 42 1.3
15gb|AC148688.1| Macaca mulatta Major Histocompatibility Complex B... 42 1.3
16gb|AC122708.3| Homo sapiens chromosome 5 clone RP11-185I4, compl... 42 1.3
17dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partia... 42 1.3
18gb|AF158654.1|AF158654 Fragaria x ananassa cytosolic ascorbate p... 42 1.3
19ref|NM_001036870.1| Arabidopsis thaliana unknown protein AT5G268... 40 5.2
20ref|NM_122567.2| Arabidopsis thaliana unknown protein AT5G26850 ... 40 5.2
21ref|NM_001036871.1| Arabidopsis thaliana unknown protein AT5G268... 40 5.2
22gb|BT010590.1| Arabidopsis thaliana At5g26850 gene, complete cds 40 5.2
23emb|CR925723.7| Zebrafish DNA sequence from clone RP71-81E14, co... 40 5.2
24gb|AC098719.3| Mus musculus clone RP23-2M3, complete sequence 40 5.2
25gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete seq... 40 5.2
26gb|AC004260.1| Arabidopsis thaliana chromosome I BAC T14N5 genom... 40 5.2
27dbj|AK117216.1| Arabidopsis thaliana At5g26850 mRNA for unknown ... 40 5.2
28gb|AE015924.1| Porphyromonas gingivalis W83, complete genome 40 5.2 
>ref|XM_466188.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1628

 Score =  165 bits (83), Expect = 1e-37
 Identities = 137/155 (88%)
 Strand = Plus / Minus

                                                                       
Query: 86  attctgcttcaatatattatgaagcatttggaatccattcatgttgatgatatccaacag 145
           ||||||||| |||||||| ||||||||||| | ||||||| | |||||||||||||||||
Sbjct: 296 attctgctttaatatattgtgaagcatttgcagtccattcttattgatgatatccaacag 237

                                                                       
Query: 146 gacagagcgtgattttgtttttagaagtgcatcaagaattaacgaaagatcccttgcact 205
           ||||||    ||| ||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 236 gacagaattggatcttgttttcagaagtgcatcaagaattaacgaaagatcccttacact 177

                                              
Query: 206 tttagatgtacccccagccttgtcacgttctgctg 240
           |||||| || |||||||| ||||||| ||| ||||
Sbjct: 176 tttagacgtgcccccagcattgtcaccttccgctg 142



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 22  aagctagaaactccaataccttcagaagcttccgtattataggt 65
           ||||||||||||| | |||||||| |||||| | ||||||||||
Sbjct: 360 aagctagaaactcaagtaccttcacaagctttcttattataggt 317



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 303 agaagcttcaaatattcatttgctgaatcttttcgtctggtaatacctccat 354
           ||||||||||| ||| |||||| ||  ||||||||| || ||||||||||||
Sbjct: 130 agaagcttcaagtatccatttgttgcgtcttttcgtttgctaatacctccat 79
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>ref|XM_466187.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2280

 Score =  165 bits (83), Expect = 1e-37
 Identities = 137/155 (88%)
 Strand = Plus / Minus

                                                                        
Query: 86   attctgcttcaatatattatgaagcatttggaatccattcatgttgatgatatccaacag 145
            ||||||||| |||||||| ||||||||||| | ||||||| | |||||||||||||||||
Sbjct: 1953 attctgctttaatatattgtgaagcatttgcagtccattcttattgatgatatccaacag 1894

                                                                        
Query: 146  gacagagcgtgattttgtttttagaagtgcatcaagaattaacgaaagatcccttgcact 205
            ||||||    ||| ||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 1893 gacagaattggatcttgttttcagaagtgcatcaagaattaacgaaagatcccttacact 1834

                                               
Query: 206  tttagatgtacccccagccttgtcacgttctgctg 240
            |||||| || |||||||| ||||||| ||| ||||
Sbjct: 1833 tttagacgtgcccccagcattgtcaccttccgctg 1799



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                
Query: 303  agaagcttcaaatattcatttgctgaatcttttcgtctggtaatacctccat 354
            ||||||||||| ||| |||||| ||  ||||||||| || ||||||||||||
Sbjct: 1787 agaagcttcaagtatccatttgttgcgtcttttcgtttgctaatacctccat 1736
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>dbj|AK106534.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B04, full
           insert sequence
          Length = 1627

 Score =  165 bits (83), Expect = 1e-37
 Identities = 137/155 (88%)
 Strand = Plus / Minus

                                                                       
Query: 86  attctgcttcaatatattatgaagcatttggaatccattcatgttgatgatatccaacag 145
           ||||||||| |||||||| ||||||||||| | ||||||| | |||||||||||||||||
Sbjct: 296 attctgctttaatatattgtgaagcatttgcagtccattcttattgatgatatccaacag 237

                                                                       
Query: 146 gacagagcgtgattttgtttttagaagtgcatcaagaattaacgaaagatcccttgcact 205
           ||||||    ||| ||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 236 gacagaattggatcttgttttcagaagtgcatcaagaattaacgaaagatcccttacact 177

                                              
Query: 206 tttagatgtacccccagccttgtcacgttctgctg 240
           |||||| || |||||||| ||||||| ||| ||||
Sbjct: 176 tttagacgtgcccccagcattgtcaccttccgctg 142



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 22  aagctagaaactccaataccttcagaagcttccgtattataggt 65
           ||||||||||||| | |||||||| |||||| | ||||||||||
Sbjct: 360 aagctagaaactcaagtaccttcacaagctttcttattataggt 317



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 303 agaagcttcaaatattcatttgctgaatcttttcgtctggtaatacctccat 354
           ||||||||||| ||| |||||| ||  ||||||||| || ||||||||||||
Sbjct: 130 agaagcttcaagtatccatttgttgcgtcttttcgtttgctaatacctccat 79
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>dbj|AK064575.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-E05, full
            insert sequence
          Length = 2280

 Score =  165 bits (83), Expect = 1e-37
 Identities = 137/155 (88%)
 Strand = Plus / Minus

                                                                        
Query: 86   attctgcttcaatatattatgaagcatttggaatccattcatgttgatgatatccaacag 145
            ||||||||| |||||||| ||||||||||| | ||||||| | |||||||||||||||||
Sbjct: 1953 attctgctttaatatattgtgaagcatttgcagtccattcttattgatgatatccaacag 1894

                                                                        
Query: 146  gacagagcgtgattttgtttttagaagtgcatcaagaattaacgaaagatcccttgcact 205
            ||||||    ||| ||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 1893 gacagaattggatcttgttttcagaagtgcatcaagaattaacgaaagatcccttacact 1834

                                               
Query: 206  tttagatgtacccccagccttgtcacgttctgctg 240
            |||||| || |||||||| ||||||| ||| ||||
Sbjct: 1833 tttagacgtgcccccagcattgtcaccttccgctg 1799



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                
Query: 303  agaagcttcaaatattcatttgctgaatcttttcgtctggtaatacctccat 354
            ||||||||||| ||| |||||| ||  ||||||||| || ||||||||||||
Sbjct: 1787 agaagcttcaagtatccatttgttgcgtcttttcgtttgctaatacctccat 1736
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                            
Query: 120      ccattcatgttgatgatatccaacaggacagagcgtgattttgtttttagaagtgcatca 179
                |||||| | |||||||||||||||||||||||    ||| ||||||| ||||||||||||
Sbjct: 20926118 ccattcttattgatgatatccaacaggacagaattggatcttgttttcagaagtgcatca 20926059

                                          
Query: 180      agaattaacgaaagatcccttgcact 205
                ||||||||||||||||||||| ||||
Sbjct: 20926058 agaattaacgaaagatcccttacact 20926033



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 86       attctgcttcaatatattatgaagcatttg 115
                ||||||||| |||||||| |||||||||||
Sbjct: 20926242 attctgctttaatatattgtgaagcatttg 20926213
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>dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0470G10
          Length = 145419

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                         
Query: 120   ccattcatgttgatgatatccaacaggacagagcgtgattttgtttttagaagtgcatca 179
             |||||| | |||||||||||||||||||||||    ||| ||||||| ||||||||||||
Sbjct: 49590 ccattcttattgatgatatccaacaggacagaattggatcttgttttcagaagtgcatca 49531

                                       
Query: 180   agaattaacgaaagatcccttgcact 205
             ||||||||||||||||||||| ||||
Sbjct: 49530 agaattaacgaaagatcccttacact 49505



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 86    attctgcttcaatatattatgaagcatttg 115
             ||||||||| |||||||| |||||||||||
Sbjct: 49714 attctgctttaatatattgtgaagcatttg 49685
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>ref|XM_429174.1| PREDICTED: Gallus gallus similar to Zinc finger protein 462
            (LOC431622), mRNA
          Length = 6219

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 129  ttgatgatatccaacaggacaga 151
            |||||||||||||||||||||||
Sbjct: 3629 ttgatgatatccaacaggacaga 3607
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>emb|BX929999.1| Gallus gallus finished cDNA, clone ChEST764c6
          Length = 823

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 129 ttgatgatatccaacaggacaga 151
           |||||||||||||||||||||||
Sbjct: 109 ttgatgatatccaacaggacaga 87
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>emb|CR925757.8| Zebrafish DNA sequence from clone CH211-208H16 in linkage group 5,
             complete sequence
          Length = 154617

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 17    cttcaaagctagaaactccaat 38
             ||||||||||||||||||||||
Sbjct: 48228 cttcaaagctagaaactccaat 48249
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>dbj|AK221916.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL22-37-D10
          Length = 1632

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 31  actccaataccttcagaagcttccgtattatagg 64
           |||| |||||||||||||| ||||| ||||||||
Sbjct: 536 actctaataccttcagaagtttccggattatagg 503
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>gb|AC164620.5| Mus musculus BAC clone RP23-64H20 from chromosome 18, complete sequence
          Length = 182838

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 252    ttttcccgttcctctgtagtattgt 276
              |||||| ||||||||||||||||||
Sbjct: 133235 ttttcctgttcctctgtagtattgt 133211
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>gb|AC109291.12| Mus musculus chromosome 18, clone RP24-231C23, complete sequence
          Length = 191711

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 252    ttttcccgttcctctgtagtattgt 276
              |||||| ||||||||||||||||||
Sbjct: 175153 ttttcctgttcctctgtagtattgt 175177
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>gb|AC126752.2| Homo sapiens chromosome 5 clone CTD-2322H6, complete sequence
          Length = 148101

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 307   gcttcaaatattcatttgctgaatc 331
             ||||||||||||||||||| |||||
Sbjct: 35085 gcttcaaatattcatttgcagaatc 35109
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>dbj|AB179062.1| Macaca fascicularis testis cDNA clone: QtsA-12393, similar to human
           HLA-B associated transcript 2 (BAT2), transcript
           variant2, mRNA, RefSeq: NM_004638.2
          Length = 2980

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 244 ttgcagcattttcccgttcct 264
           |||||||||||||||||||||
Sbjct: 117 ttgcagcattttcccgttcct 97
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>gb|AC148688.1| Macaca mulatta Major Histocompatibility Complex BAC MMU218K02, complete
             sequence
          Length = 182826

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 244   ttgcagcattttcccgttcct 264
             |||||||||||||||||||||
Sbjct: 67563 ttgcagcattttcccgttcct 67543
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>gb|AC122708.3| Homo sapiens chromosome 5 clone RP11-185I4, complete sequence
          Length = 145673

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 307   gcttcaaatattcatttgctgaatc 331
             ||||||||||||||||||| |||||
Sbjct: 66823 gcttcaaatattcatttgcagaatc 66847
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>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds
          Length = 3284914

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   ttgcagcattttcccgttcct 264
             |||||||||||||||||||||
Sbjct: 10487 ttgcagcattttcccgttcct 10507
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>gb|AF158654.1|AF158654 Fragaria x ananassa cytosolic ascorbate peroxidase APX26 gene,
            complete cds
          Length = 3430

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 80   gtctcgattctgcttcaatat 100
            |||||||||||||||||||||
Sbjct: 2670 gtctcgattctgcttcaatat 2690
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>ref|NM_001036870.1| Arabidopsis thaliana unknown protein AT5G26850 transcript variant
            AT5G26850.2 mRNA, complete cds
          Length = 3041

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 164  ttttagaagtgcatcaagaa 183
            ||||||||||||||||||||
Sbjct: 1528 ttttagaagtgcatcaagaa 1509
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>ref|NM_122567.2| Arabidopsis thaliana unknown protein AT5G26850 transcript variant
            AT5G26850.1 mRNA, complete cds
          Length = 3092

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 164  ttttagaagtgcatcaagaa 183
            ||||||||||||||||||||
Sbjct: 1579 ttttagaagtgcatcaagaa 1560
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>ref|NM_001036871.1| Arabidopsis thaliana unknown protein AT5G26850 transcript variant
            AT5G26850.3 mRNA, complete cds
          Length = 3100

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 164  ttttagaagtgcatcaagaa 183
            ||||||||||||||||||||
Sbjct: 1587 ttttagaagtgcatcaagaa 1568
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>gb|BT010590.1| Arabidopsis thaliana At5g26850 gene, complete cds
          Length = 2913

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 164  ttttagaagtgcatcaagaa 183
            ||||||||||||||||||||
Sbjct: 1443 ttttagaagtgcatcaagaa 1424
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>emb|CR925723.7| Zebrafish DNA sequence from clone RP71-81E14, complete sequence
          Length = 157989

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     cttcaaagctagaaactcca 36
              ||||||||||||||||||||
Sbjct: 140994 cttcaaagctagaaactcca 141013
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>gb|AC098719.3| Mus musculus clone RP23-2M3, complete sequence
          Length = 219626

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    ccgctgggatcacaaatgca 302
              ||||||||||||||||||||
Sbjct: 102029 ccgctgggatcacaaatgca 102048
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>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence
          Length = 110946

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   ttttagaagtgcatcaagaa 183
             ||||||||||||||||||||
Sbjct: 49733 ttttagaagtgcatcaagaa 49714
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>gb|AC004260.1| Arabidopsis thaliana chromosome I BAC T14N5 genomic sequence, complete
             sequence
          Length = 83822

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 37    ataccttcagaagcttccgtattatagg 64
             ||||||||||||| ||||| ||||||||
Sbjct: 70348 ataccttcagaagtttccggattatagg 70375
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>dbj|AK117216.1| Arabidopsis thaliana At5g26850 mRNA for unknown protein, complete
            cds, clone: RAFL16-76-N10
          Length = 3204

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 164  ttttagaagtgcatcaagaa 183
            ||||||||||||||||||||
Sbjct: 1519 ttttagaagtgcatcaagaa 1500
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>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome
          Length = 2343476

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 296    aaatgcaagaagcttcaaatattc 319
              |||||||||||||||| |||||||
Sbjct: 112827 aaatgcaagaagcttccaatattc 112804


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,887,448
Number of Sequences: 3902068
Number of extensions: 3887448
Number of successful extensions: 70601
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70502
Number of HSP's gapped (non-prelim): 93
length of query: 389
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 367
effective length of database: 17,147,199,772
effective search space: 6293022316324
effective search space used: 6293022316324
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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