ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MDR1_ARATH (Q9ZR72) Multidrug resistance protein 1 (P-glycoprote... 32 0.43
2ATF1_YEAST (P40353) Alcohol O-acetyltransferase 1 (EC 2.3.1.84) ... 31 0.73
3LIE2_STREX (P83913) Leupeptin-inactivating enzyme 2 precursor (E... 29 2.8

>MDR1_ARATH (Q9ZR72) Multidrug resistance protein 1 (P-glycoprotein 1) (AtPgp1)|
          Length = 1286

 Score = 32.0 bits (71), Expect = 0.43
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +2

Query: 8    PTIASH*IHQKMHQTGVSGEKPNTHACMGTMLTGECLLNKMAMFHFSHKG----IQSSPM 175
            P + +  + QKM  TG SG+    HA  GT L GE + N   +  F+ +     + ++ +
Sbjct: 854  PVVVAATVLQKMFMTGFSGDLEAAHA-KGTQLAGEAIANVRTVAAFNSEAKIVRLYTANL 912

Query: 176  SPQLPR 193
             P L R
Sbjct: 913  EPPLKR 918



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>ATF1_YEAST (P40353) Alcohol O-acetyltransferase 1 (EC 2.3.1.84) (AATase 1)|
          Length = 525

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 101 TLCPYMHVCWVSRLTHLFGAFFGGFNAMQWL 9
           T+ P++HVCW   L H +G FF   N  +WL
Sbjct: 314 TITPFLHVCWFVSL-HKWGKFFKPLN-FEWL 342



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>LIE2_STREX (P83913) Leupeptin-inactivating enzyme 2 precursor (EC 3.4.24.-)|
           (LIE2)
          Length = 1090

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +2

Query: 50  TGVSGEKPNTHACMGTMLTGECLLNKMAMFHFSHKGIQSSPMSPQLPRLEGGSLASPITS 229
           T   G KPN+  C GT LTG  + N   +F +    +++S MS +  R    S A  + +
Sbjct: 429 TSPGGGKPNSSTCNGTSLTGVGVQNAGKIF-YGGMLLKTSSMSYKKYRTATLSSAKSLDA 487

Query: 230 MLSLF 244
              LF
Sbjct: 488 TCDLF 492


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,549,688
Number of Sequences: 219361
Number of extensions: 794554
Number of successful extensions: 2007
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2007
length of database: 80,573,946
effective HSP length: 61
effective length of database: 67,192,925
effective search space used: 1612630200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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