Clone Name | rbastl17f12 |
---|---|
Clone Library Name | barley_pub |
>gb|AC125407.4| Mus musculus BAC clone RP23-94F17 from chromosome 5, complete sequence Length = 233082 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 ctgtcccttttcttatcaaac 253 ||||||||||||||||||||| Sbjct: 57274 ctgtcccttttcttatcaaac 57294
>gb|AC131778.3| Mus musculus BAC clone RP24-328C2 from chromosome 7, complete sequence Length = 175406 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 acacatgcatgtatgggcaca 97 ||||||||||||||||||||| Sbjct: 87409 acacatgcatgtatgggcaca 87429
>gb|AC122929.4| Mus musculus BAC clone RP23-12A18 from chromosome 6, complete sequence Length = 252503 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 cacacatgcatgtatgggcac 96 ||||||||||||||||||||| Sbjct: 130191 cacacatgcatgtatgggcac 130211
>gb|AY119610.1| Drosophila melanogaster LD34829 full insert cDNA Length = 3402 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 accaaaaaatgcaccaaacag 53 ||||||||||||||||||||| Sbjct: 53 accaaaaaatgcaccaaacag 73
>ref|NM_166214.1| Drosophila melanogaster CG6967-RB, transcript variant B (CG6967), mRNA Length = 3470 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 accaaaaaatgcaccaaacag 53 ||||||||||||||||||||| Sbjct: 96 accaaaaaatgcaccaaacag 116
>ref|NM_137341.1| Drosophila melanogaster CG6967-RA, transcript variant A (CG6967), mRNA Length = 3406 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 accaaaaaatgcaccaaacag 53 ||||||||||||||||||||| Sbjct: 96 accaaaaaatgcaccaaacag 116
>gb|AC099032.1| Drosophila melanogaster, chromosome 2R, region 53F-54A, BAC clone BACR32P08, complete sequence Length = 163072 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 accaaaaaatgcaccaaacag 53 ||||||||||||||||||||| Sbjct: 70365 accaaaaaatgcaccaaacag 70385
>gb|AF182067.1|AF182067S1 Mus musculus secretory protein BV8 (Bv8) gene, exons 1 and 2 Length = 12920 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 cacacatgcatgtatgggcac 96 ||||||||||||||||||||| Sbjct: 6772 cacacatgcatgtatgggcac 6792
>gb|AC101851.11| Mus musculus chromosome 7, clone RP23-276E14, complete sequence Length = 175088 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 acacatgcatgtatgggcaca 97 ||||||||||||||||||||| Sbjct: 6852 acacatgcatgtatgggcaca 6872
>gb|AE003804.4| Drosophila melanogaster chromosome 2R, section 46 of 73 of the complete sequence Length = 260337 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 accaaaaaatgcaccaaacag 53 ||||||||||||||||||||| Sbjct: 57657 accaaaaaatgcaccaaacag 57677
>gb|AC005717.2|AC005717 Drosophila melanogaster, chromosome 2R, region 53E6-53F4, P1 clone DS00078, complete sequence Length = 51289 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 accaaaaaatgcaccaaacag 53 ||||||||||||||||||||| Sbjct: 22213 accaaaaaatgcaccaaacag 22193
>gb|AC159991.9| Mus musculus chromosome 1, clone RP23-413H17, complete sequence Length = 180715 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 cacacatgcatgtatgggca 95 |||||||||||||||||||| Sbjct: 143237 cacacatgcatgtatgggca 143256
>gb|AC134406.14| Mus musculus chromosome 9, clone RP24-349J23, complete sequence Length = 192663 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tggaaggagggagccttgct 214 |||||||||||||||||||| Sbjct: 175922 tggaaggagggagccttgct 175941
>gb|AC151360.2| Xenopus tropicalis clone ISB-85C20, complete sequence Length = 42471 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 gagaaacccaacacacatgc 84 |||||||||||||||||||| Sbjct: 17495 gagaaacccaacacacatgc 17514
>gb|AC166052.5| Mus musculus BAC clone RP24-95N16 from chromosome 9, complete sequence Length = 175760 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tggaaggagggagccttgct 214 |||||||||||||||||||| Sbjct: 120652 tggaaggagggagccttgct 120633
>gb|AC128702.4| Mus musculus BAC clone RP24-239M3 from chromosome 9, complete sequence Length = 159431 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tggaaggagggagccttgct 214 |||||||||||||||||||| Sbjct: 60859 tggaaggagggagccttgct 60840
>gb|AC117659.7| Mus musculus, clone RP23-316N7, complete sequence Length = 196981 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cacatgcatgtatgggcaca 97 |||||||||||||||||||| Sbjct: 115560 cacatgcatgtatgggcaca 115579
>gb|AC165950.1| Mus musculus BAC clone RP24-235L20 from chromosome 13, complete sequence Length = 178927 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 aacacacatgcatgtatgggcaca 97 |||||||||||||| ||||||||| Sbjct: 54549 aacacacatgcatgcatgggcaca 54572
>gb|AC079223.11| Mus musculus chromosome 1, clone RP22-318M10, complete sequence Length = 137729 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 gaatccaccaaaaaatgcaccaaa 50 |||||||||||||||| ||||||| Sbjct: 71827 gaatccaccaaaaaattcaccaaa 71850
>gb|AC161117.4| Mus musculus BAC clone RP24-146I24 from chromosome 13, complete sequence Length = 195710 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 cacacatgcatgtatgggca 95 |||||||||||||||||||| Sbjct: 165305 cacacatgcatgtatgggca 165324
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 caccaaaaaatgcaccaaac 51 |||||||||||||||||||| Sbjct: 30124557 caccaaaaaatgcaccaaac 30124538
>gb|AC090617.16| Homo sapiens chromosome 17, clone RP11-667K14, complete sequence Length = 204630 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 gaatccaccaaaaaatgcaccaaa 50 |||| ||||||||||||||||||| Sbjct: 90446 gaattcaccaaaaaatgcaccaaa 90423
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0685G12 Length = 149155 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 caccaaaaaatgcaccaaac 51 |||||||||||||||||||| Sbjct: 104154 caccaaaaaatgcaccaaac 104135
>gb|AC151355.2| Xenopus tropicalis clone ISB-52K19, complete sequence Length = 55519 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 gagaaacccaacacacatgc 84 |||||||||||||||||||| Sbjct: 10676 gagaaacccaacacacatgc 10695
>gb|AC161461.5| Mus musculus BAC clone RP23-104L7 from chromosome 13, complete sequence Length = 234110 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 cacacatgcatgtatgggca 95 |||||||||||||||||||| Sbjct: 15287 cacacatgcatgtatgggca 15306
>gb|AC158559.7| Mus musculus chromosome 1, clone RP24-300L5, complete sequence Length = 169324 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 gaatccaccaaaaaatgcaccaaa 50 |||||||||||||||| ||||||| Sbjct: 92407 gaatccaccaaaaaattcaccaaa 92430 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,517,877 Number of Sequences: 3902068 Number of extensions: 2517877 Number of successful extensions: 49944 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49897 Number of HSP's gapped (non-prelim): 47 length of query: 257 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 235 effective length of database: 17,147,199,772 effective search space: 4029591946420 effective search space used: 4029591946420 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)