ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl17f11 |
|---|---|
| Clone Library Name | barley_pub |
>MDM2_BRARE (O42354) Ubiquitin-protein ligase E3 Mdm2 (EC 6.3.2.-) (p53-binding| protein Mdm2) (Double minute 2 protein) Length = 445 Score = 32.3 bits (72), Expect = 0.31 Identities = 10/26 (38%), Positives = 19/26 (73%) Frame = -1 Query: 261 CRECAQTLRFQTNKCPMCRQPVESLL 184 C CA+ L+ + CP+CR+P++S++ Sbjct: 415 CYTCAKKLKNRNKLCPVCREPIQSVV 440
>LRSM1_MOUSE (Q80ZI6) Ubiquitin ligase protein LRSAM1 (EC 6.3.2.-) (Leucine-rich| repeat and sterile alpha motif-containing protein 1) (Tsg101-associated ligase) Length = 727 Score = 32.0 bits (71), Expect = 0.41 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -1 Query: 267 CLCRECAQTLRFQTNKCPMCRQPVESLLEI 178 C C++C Q LR CP+CRQ + L I Sbjct: 698 CCCQQCCQPLR----TCPLCRQEISQRLRI 723
>MDM2_MOUSE (P23804) Ubiquitin-protein ligase E3 Mdm2 (EC 6.3.2.-) (p53-binding| protein Mdm2) (Oncoprotein Mdm2) (Double minute 2 protein) Length = 489 Score = 32.0 bits (71), Expect = 0.41 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = -1 Query: 261 CRECAQTLRFQTNKCPMCRQPVESLL 184 C CA+ L+ + CP+CRQP++ ++ Sbjct: 459 CFTCAKKLKKRNKPCPVCRQPIQMIV 484
>MDM2_CANFA (P56950) Ubiquitin-protein ligase E3 Mdm2 (EC 6.3.2.-) (p53-binding| protein Mdm2) (Double minute 2 protein) (Cdm2) Length = 487 Score = 32.0 bits (71), Expect = 0.41 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = -1 Query: 261 CRECAQTLRFQTNKCPMCRQPVESLL 184 C CA+ L+ + CP+CRQP++ ++ Sbjct: 457 CFTCAKKLKKRNKPCPVCRQPIQMIV 482
>MDM2_HUMAN (Q00987) Ubiquitin-protein ligase E3 Mdm2 (EC 6.3.2.-) (p53-binding| protein Mdm2) (Oncoprotein Mdm2) (Double minute 2 protein) (Hdm2) Length = 491 Score = 32.0 bits (71), Expect = 0.41 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = -1 Query: 261 CRECAQTLRFQTNKCPMCRQPVESLL 184 C CA+ L+ + CP+CRQP++ ++ Sbjct: 461 CFTCAKKLKKRNKPCPVCRQPIQMIV 486
>MDM2_HORSE (P56951) Ubiquitin-protein ligase E3 Mdm2 (EC 6.3.2.-) (p53-binding| protein Mdm2) (Double minute 2 protein) (Edm2) Length = 491 Score = 32.0 bits (71), Expect = 0.41 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = -1 Query: 261 CRECAQTLRFQTNKCPMCRQPVESLL 184 C CA+ L+ + CP+CRQP++ ++ Sbjct: 461 CFTCAKKLKKRNKPCPVCRQPIQMIV 486
>MDM2_FELCA (Q7YRZ8) Ubiquitin-protein ligase E3 Mdm2 (EC 6.3.2.-) (p53-binding| protein Mdm2) (Double minute 2 protein) Length = 491 Score = 32.0 bits (71), Expect = 0.41 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = -1 Query: 261 CRECAQTLRFQTNKCPMCRQPVESLL 184 C CA+ L+ + CP+CRQP++ ++ Sbjct: 461 CFTCAKKLKKRNKPCPVCRQPIQMIV 486
>MDM2_MESAU (Q60524) Ubiquitin-protein ligase E3 Mdm2 (EC 6.3.2.-) (p53-binding| protein Mdm2) (Oncoprotein Mdm2) (Double minute 2 protein) (Fragment) Length = 466 Score = 31.6 bits (70), Expect = 0.53 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = -1 Query: 261 CRECAQTLRFQTNKCPMCRQPVESL 187 C CA+ L+ + CP+CRQP++ + Sbjct: 442 CFPCAKKLKKRNKPCPVCRQPIQMI 466
>LRSM1_HUMAN (Q6UWE0) Ubiquitin ligase protein LRSAM1 (EC 6.3.2.-) (Leucine-rich| repeat and sterile alpha motif-containing protein 1) (Tsg101-associated ligase) (hTAL) Length = 723 Score = 31.6 bits (70), Expect = 0.53 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -1 Query: 267 CLCRECAQTLRFQTNKCPMCRQPVESLLEI 178 C C++C Q LR CP+CRQ + L I Sbjct: 694 CCCQQCCQPLR----TCPLCRQDIAQRLRI 719
>ZNFP_LYCVA (P18541) RING finger protein Z| Length = 89 Score = 31.6 bits (70), Expect = 0.53 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -1 Query: 264 LCRECAQTLRFQTNKCPMCRQPVESLLEI 178 LCR C L +++CP+C+ P+ + L+I Sbjct: 49 LCRHCLNLLLSVSDRCPLCKYPLPTRLKI 77
>MDM2_XENLA (P56273) Ubiquitin-protein ligase E3 Mdm2 (EC 6.3.2.-) (p53-binding| protein Mdm2) (Double minute 2 protein) (Xdm2) Length = 473 Score = 31.2 bits (69), Expect = 0.69 Identities = 9/26 (34%), Positives = 18/26 (69%) Frame = -1 Query: 261 CRECAQTLRFQTNKCPMCRQPVESLL 184 C CA+ L+ + CP+CR+P++ ++ Sbjct: 443 CYTCAKKLKKRNKPCPVCREPIQMIV 468
>ZNFP_LYCVT (P19325) RING finger protein Z (Fragment)| Length = 71 Score = 29.6 bits (65), Expect = 2.0 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = -1 Query: 264 LCRECAQTLRFQTNKCPMCRQPV 196 LCR C L +++CP+C+ P+ Sbjct: 49 LCRHCLNLLLTSSDRCPLCKYPL 71
>ZNFP_LYCVP (P19326) RING finger protein Z (Fragment)| Length = 51 Score = 29.6 bits (65), Expect = 2.0 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = -1 Query: 264 LCRECAQTLRFQTNKCPMCRQPV 196 LCR C L +++CP+C+ P+ Sbjct: 29 LCRHCLNLLLTSSDRCPLCKYPL 51
>ETFD_HUMAN (Q16134) Electron transfer flavoprotein-ubiquinone oxidoreductase,| mitochondrial precursor (EC 1.5.5.1) (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF dehydrogenase) (Electron-transferring-flavoprotein dehydrogenase) Length = 617 Score = 29.3 bits (64), Expect = 2.6 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = -1 Query: 291 IMPFAPLQCLCRECAQTLRFQTNKCPMC 208 ++P A L CL +C L+ + N P+C Sbjct: 2 LVPLAKLSCLAYQCFHALKIKKNYLPLC 29
>HYPA_CAMJE (Q9PHP0) Probable hydrogenase nickel incorporation protein hypA| Length = 114 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = -1 Query: 279 APLQCLCRECAQTLRFQTN--KCPMCR 205 APL+ LC +C QT + N KCP C+ Sbjct: 68 APLEILCLKCDQTSILEENVFKCPKCQ 94
>POLG_HCVVA (Q9QAX1) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +3 Query: 156 AWACCQP*SQEGSQQAACTWGICWSGTLMSEHTPC 260 +W+ C S+EG + C+ W+G L+ TPC Sbjct: 2427 SWSTC---SEEGGSEVCCSMSYSWTGALI---TPC 2455
>OPSD_SCYCA (O93459) Rhodopsin| Length = 354 Score = 28.9 bits (63), Expect = 3.4 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 13/70 (18%) Frame = +3 Query: 105 NGTSFEGFLATXXXXXXAWA-----------CCQP*S--QEGSQQAACTWGICWSGTLMS 245 +G +FEGF AT W+ C+P S + GSQ A G+ W + Sbjct: 108 SGCNFEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSNFRFGSQHAFMGVGLTWIMAMAC 167 Query: 246 EHTPCIGTAR 275 P +G +R Sbjct: 168 AFPPLVGWSR 177
>NEURL_MOUSE (Q923S6) Neuralized-like protein 1 (m-neuralized 1) (m-neu1)| Length = 574 Score = 28.9 bits (63), Expect = 3.4 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = -1 Query: 267 CLCRECAQTLRFQTNKC-PMCRQPVESLLE 181 CLC C L+ + C P+CR+P++ +++ Sbjct: 540 CLCYSCGLRLKKALHACCPICRRPIKDIIK 569
>ZNFP_LASSJ (O73557) Ring-finger protein Z| Length = 98 Score = 28.5 bits (62), Expect = 4.5 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = -1 Query: 264 LCRECAQTLRFQTNKCPMCRQPVESLL 184 LC C L +N+CP+C+ P+ + L Sbjct: 48 LCLNCLTLLLSVSNRCPICKMPLPTKL 74
>MIB2_RAT (Q68LP1) Ubiquitin ligase protein MIB2 (EC 6.3.2.-) (Mind bomb| homolog 2) (RBSC-skeletrophin/dystrophin-like polypeptide) Length = 971 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -1 Query: 261 CRECAQTLRFQTNKCPMCRQPVESLLEIKV 172 C C L N CP+CRQP+ ++I V Sbjct: 946 CAPCGAAL----NACPICRQPIRDRIQIFV 971
>MIB2_MOUSE (Q8R516) Ubiquitin ligase protein MIB2 (EC 6.3.2.-) (Mind bomb| homolog 2) (Mind bomb-2) (Skeletrophin) (Dystrophin-like protein) (Dyslike) Length = 973 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -1 Query: 261 CRECAQTLRFQTNKCPMCRQPVESLLEIKV 172 C C L N CP+CRQP+ ++I V Sbjct: 948 CAPCGAAL----NACPICRQPIRDRIQIFV 973
>IAP_GVCP (P41436) Apoptosis inhibitor IAP| Length = 275 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = -1 Query: 261 CRECAQTLRFQTNKCPMCRQPVESLLEI 178 C +CA ++ +KCPMCR+ V S+L++ Sbjct: 249 CAKCALSV----DKCPMCRKIVTSVLKV 272
>IAP1_NPVOP (O10296) Apoptosis inhibitor 1 (IAP-1)| Length = 275 Score = 28.5 bits (62), Expect = 4.5 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -1 Query: 267 CLCRECAQTLRFQTNKCPMCRQPVESLLEIKV 172 C+C +C L KCP CRQ V ++I V Sbjct: 246 CVCMQCYFAL---DGKCPTCRQDVADFIKIFV 274
>NEUL1_HUMAN (O76050) Neuralized-like protein 1 (h-neuralized 1) (h-neu) (RING| finger protein 67) Length = 574 Score = 28.5 bits (62), Expect = 4.5 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = -1 Query: 267 CLCRECAQTLRFQTNKC-PMCRQPVESLLE 181 CLC C L+ + C P+CR+P++ +++ Sbjct: 540 CLCYACGLRLKKALHACCPICRRPIKDIIK 569
>LSHB_PHYCA (P25330) Lutropin beta chain (Luteinizing hormone beta subunit)| (LSH-beta) (LSH-B) (LH-B) Length = 118 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -1 Query: 285 PFAPLQCLCRECAQTLRFQTNKCPMC 208 P PL+ LCR TL Q CP+C Sbjct: 1 PRGPLRPLCRPINATLAAQNZACPVC 26
>RAD5_KLULA (Q6CJM4) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1114 Score = 27.7 bits (60), Expect = 7.7 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 6/40 (15%) Frame = -1 Query: 273 LQCLCREC-AQTLRFQTNK-----CPMCRQPVESLLEIKV 172 L C C A+ + FQ NK CP CR P+ +K+ Sbjct: 878 LHTFCEPCLAEYIEFQQNKKLSINCPYCRMPISEANVLKL 917
>IE61_VZVD (P09309) Transcriptional repressor IE61 (Immediate-early protein| 61) (IE61) Length = 467 Score = 27.7 bits (60), Expect = 7.7 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -1 Query: 294 KIMPFAPLQCLCRECAQTLRFQTNKCPMCRQPVESLL 184 K MP L C C + + +CP+CR PV+S+L Sbjct: 31 KTMPC--LHDFCFVCIRAWTSTSVQCPLCRCPVQSIL 65
>TOPRS_MOUSE (Q80Z37) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)| (SUMO1-protein E3 ligase Topors) (Topoisomerase I-binding RING finger protein) (Topoisomerase I-binding arginine/serine-rich protein) (Tumor suppressor p53-binding protein 3) (p53-bindi Length = 1033 Score = 27.7 bits (60), Expect = 7.7 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = -1 Query: 273 LQCLCRECAQTLRFQTNKCPMCRQPVESL 187 L C C Q +CP+C+QP +S+ Sbjct: 121 LHKFCFRCVQEWSKNKAECPLCKQPFDSI 149
>TOPRS_HUMAN (Q9NS56) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)| (SUMO1-protein E3 ligase Topors) (Topoisomerase I-binding RING finger protein) (Topoisomerase I-binding arginine/serine-rich protein) (Tumor suppressor p53-binding protein 3) (p53-bindi Length = 1045 Score = 27.7 bits (60), Expect = 7.7 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = -1 Query: 273 LQCLCRECAQTLRFQTNKCPMCRQPVESL 187 L C C Q +CP+C+QP +S+ Sbjct: 120 LHKFCFRCVQEWSKNKAECPLCKQPFDSI 148 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,552,895 Number of Sequences: 219361 Number of extensions: 729070 Number of successful extensions: 1990 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1957 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1988 length of database: 80,573,946 effective HSP length: 77 effective length of database: 63,683,149 effective search space used: 1528395576 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
