ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WDR3_HUMAN (Q9UNX4) WD-repeat protein 3 30 1.5
2SIA1_YEAST (Q12212) Protein SIA1 precursor 30 1.5
3ZC3H6_MOUSE (Q8BYK8) Zinc finger CCCH-type domain-containing pro... 29 3.4
4ZC3H6_HUMAN (P61129) Zinc finger CCCH-type domain-containing pro... 28 4.4
5PEPX_STRA5 (Q8DXW0) Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11) ... 28 7.6
6ZC3H8_MOUSE (Q9JJ48) Zinc finger CCCH-type domain-containing pro... 28 7.6

>WDR3_HUMAN (Q9UNX4) WD-repeat protein 3|
          Length = 943

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 284 CTRRFYNSRGKKRFCDSFGHMFPLLYRLISHDGSRP*EGAHDRS 153
           CT + +     K F   +GH  P++   ISHDG+    G+ DR+
Sbjct: 571 CTVKIFYVDTLKFFLSLYGHKLPVICMDISHDGALIATGSADRN 614



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>SIA1_YEAST (Q12212) Protein SIA1 precursor|
          Length = 622

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 256 GRRGFAILLVICFHF-CID*SVTMVADLRRAHTID 155
           G+R F IL +  FHF C D S+T++ +++  + ID
Sbjct: 306 GQRSFKILQITDFHFKCTDNSMTVINEIKTVNFID 340



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>ZC3H6_MOUSE (Q8BYK8) Zinc finger CCCH-type domain-containing protein 6|
          Length = 1177

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 318 GYCRKGSSCSYVHTSF 271
           GYC KG +C Y+H+ F
Sbjct: 311 GYCTKGENCIYMHSEF 326



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>ZC3H6_HUMAN (P61129) Zinc finger CCCH-type domain-containing protein 6|
          Length = 1189

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 318 GYCRKGSSCSYVHTSF 271
           GYC KG +C Y+H  F
Sbjct: 313 GYCTKGENCIYMHNEF 328



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>PEPX_STRA5 (Q8DXW0) Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11) (X-Pro|
           dipeptidyl-peptidase) (X-prolyl-dipeptidyl
           aminopeptidase) (X-PDAP)
          Length = 761

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
 Frame = +2

Query: 23  IQFHWNTAVAPTTDKSTLGKHSSHFP----------MLEIHIYTWYSYY 139
           ++ +W+  +  TT KS LG  S+             + E  I TWY YY
Sbjct: 332 VKANWSNGLVATTGKSYLGTMSTGLATTGVEGLKVIIAEAAISTWYDYY 380



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>ZC3H8_MOUSE (Q9JJ48) Zinc finger CCCH-type domain-containing protein 8 (Fetal|
           liver zinc finger protein 1)
          Length = 305

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 318 GYCRKGSSCSYVHTSF 271
           GYC KG +C Y+H+ +
Sbjct: 246 GYCTKGENCLYLHSEY 261


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,586,030
Number of Sequences: 219361
Number of extensions: 968277
Number of successful extensions: 2111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2111
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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