>CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel alpha-1C subunit|
(Voltage-gated calcium channel alpha subunit Cav1.2)
(Calcium channel, L type, alpha-1 polypeptide, isoform 1,
cardiac muscle) (Smooth muscle calcium channel blocker
receptor)
Length = 2171
Score = 27.3 bits (59), Expect = 9.3
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +3
Query: 213 PSTIITILGPCTPISP-----KPFWLRSHQIHHKYRQTIAAAPQQRAKQ 344
PST+ T+ G +P+SP + W S + H IA A Q+ A Q
Sbjct: 1815 PSTVSTVEGHGSPLSPAVRAQEAAWKLSSKRCHSQESQIAMACQEGASQ 1863
>ACOD_BOVIN (Q9TT94) Acyl-CoA desaturase (EC 1.14.19.1) (Stearoyl-CoA|
desaturase) (Fatty acid desaturase)
(Delta(9)-desaturase)
Length = 359
Score = 27.3 bits (59), Expect = 9.3
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 210 LPSTIITILGPCTPISPKPF-WLRSHQIHHKYRQTIA 317
LP + I+G F W R H+ HHK+ +T A
Sbjct: 132 LPLRVFLIIGNTMAFQNDVFEWSRDHRAHHKFSETDA 168
Database: uniprot_sprot.fasta
Posted date: May 25, 2006 5:36 PM
Number of letters in database: 80,573,946
Number of sequences in database: 219,361
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,469,219
Number of Sequences: 219361
Number of extensions: 910690
Number of successful extensions: 1963
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1963
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)