ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TMOE_PSEME (Q00460) Toluene-4-monooxygenase system protein E (EC... 28 5.4
2ACOD_CYPCA (Q92038) Acyl-CoA desaturase (EC 1.14.19.1) (Stearoyl... 28 5.4
3ATS20_HUMAN (P59510) ADAMTS-20 precursor (EC 3.4.24.-) (A disint... 28 7.1
4ACO11_TRINI (O44390) Acyl-CoA delta-11 desaturase (EC 1.14.19.-)... 27 9.3
5CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel al... 27 9.3
6YO21_CAEEL (P34671) Hypothetical protein ZK688.1 27 9.3
7ACOD_BOVIN (Q9TT94) Acyl-CoA desaturase (EC 1.14.19.1) (Stearoyl... 27 9.3

>TMOE_PSEME (Q00460) Toluene-4-monooxygenase system protein E (EC 1.14.13.-)|
          Length = 326

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 12  TICPLLINETIVQKSQHSRWKQQLCQSGLSS 104
           T+ PLLI+  +    +HSRW + L +  L +
Sbjct: 244 TLLPLLIDSQLKDAERHSRWSKALVKHALEN 274



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>ACOD_CYPCA (Q92038) Acyl-CoA desaturase (EC 1.14.19.1) (Stearoyl-CoA|
           desaturase) (Fatty acid desaturase)
           (Delta(9)-desaturase)
          Length = 327

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 270 WLRSHQIHHKYRQTIA 317
           W R H++HHKY +T A
Sbjct: 120 WSRDHRVHHKYSETDA 135



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>ATS20_HUMAN (P59510) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 20)
           (ADAM-TS 20) (ADAM-TS20)
          Length = 1911

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
 Frame = -3

Query: 256 EMGVQGPRMVMMVDGSGN*SAQTSYGQNSCSRS---------CVDELYDEDLHY 122
           E+ VQG R V+   GS N   +     NS +R          CV  LY+ D+HY
Sbjct: 786 EINVQGTRTVIEYSGSNNAVERI----NSTNRQEKELILQVLCVGNLYNPDVHY 835



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>ACO11_TRINI (O44390) Acyl-CoA delta-11 desaturase (EC 1.14.19.-)|
           (Delta(11)-desaturase)
          Length = 349

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 270 WLRSHQIHHKYRQTIA 317
           W R H++HHKY  T A
Sbjct: 119 WAREHRLHHKYSDTDA 134



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>CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel alpha-1C subunit|
            (Voltage-gated calcium channel alpha subunit Cav1.2)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 1,
            cardiac muscle) (Smooth muscle calcium channel blocker
            receptor)
          Length = 2171

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +3

Query: 213  PSTIITILGPCTPISP-----KPFWLRSHQIHHKYRQTIAAAPQQRAKQ 344
            PST+ T+ G  +P+SP     +  W  S +  H     IA A Q+ A Q
Sbjct: 1815 PSTVSTVEGHGSPLSPAVRAQEAAWKLSSKRCHSQESQIAMACQEGASQ 1863



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>YO21_CAEEL (P34671) Hypothetical protein ZK688.1|
          Length = 192

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 189 VCALQFPLPSTIITILGPCTPISPKPFWLRSHQIHHKYRQTI 314
           +C L F       T+   C P SP P+   +H  +H + QT+
Sbjct: 6   LCILYF-----FTTVTQQCAPHSPSPWTKTTHVNNHHHHQTV 42



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>ACOD_BOVIN (Q9TT94) Acyl-CoA desaturase (EC 1.14.19.1) (Stearoyl-CoA|
           desaturase) (Fatty acid desaturase)
           (Delta(9)-desaturase)
          Length = 359

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 210 LPSTIITILGPCTPISPKPF-WLRSHQIHHKYRQTIA 317
           LP  +  I+G         F W R H+ HHK+ +T A
Sbjct: 132 LPLRVFLIIGNTMAFQNDVFEWSRDHRAHHKFSETDA 168


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,469,219
Number of Sequences: 219361
Number of extensions: 910690
Number of successful extensions: 1963
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1963
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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