ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CWF19_SCHPO (Q09909) Cell cycle control protein cwf19 29 2.5
2VGF_HUMAN (O15240) Neurosecretory protein VGF precursor 28 7.3
3LRCH1_HUMAN (Q9Y2L9) Leucine-rich repeats and calponin homology ... 28 7.3
4PKNA2_BIFLO (Q8G4G1) Probable serine/threonine-protein kinase pk... 27 9.5

>CWF19_SCHPO (Q09909) Cell cycle control protein cwf19|
          Length = 639

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 277 NQTGCETFHPGTENHHHSRHGNPGH 351
           N+T  ET H     HHHSRH    H
Sbjct: 16  NETDRETNHSRRHRHHHSRHRESKH 40



to top

>VGF_HUMAN (O15240) Neurosecretory protein VGF precursor|
          Length = 616

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 252 PLPSPLDEEPDWLRDLPSWN 311
           P PS  DE PDW   LP W+
Sbjct: 512 PPPSARDELPDWNEVLPPWD 531



to top

>LRCH1_HUMAN (Q9Y2L9) Leucine-rich repeats and calponin homology|
           domain-containing protein 1 (Calponin homology
           domain-containing protein 1) (Neuronal protein 81)
           (NP81)
          Length = 728

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 301 HPGTENHHHSRHGNPGHP 354
           HP   +HHH  HG  G P
Sbjct: 25  HPHHHHHHHQHHGGTGAP 42



to top

>PKNA2_BIFLO (Q8G4G1) Probable serine/threonine-protein kinase pknA2 (EC|
           2.7.11.1)
          Length = 757

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
 Frame = -3

Query: 326 WWWFSVPG--WKVSQP 285
           WWWF+ PG  W V +P
Sbjct: 445 WWWFAGPGSYWSVPKP 460


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,925,264
Number of Sequences: 219361
Number of extensions: 852771
Number of successful extensions: 2571
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2561
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top