ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17f07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506148.1| PREDICTED Oryza sativa (japonica cultivar-group... 90 6e-15
2ref|XM_476451.1| Oryza sativa (japonica cultivar-group), mRNA 90 6e-15
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
4dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
5dbj|AK101000.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
6dbj|AK070529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
7ref|XM_463934.1| Oryza sativa (japonica cultivar-group), mRNA 62 1e-06
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
9dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
10gb|BT018635.1| Zea mays clone EL01N0504B06.d mRNA sequence 44 0.30
11emb|AL954241.1| Pan troglodytes chromosome 22 clone RP43-181I17 ... 42 1.2
12emb|AL954240.1| Pan troglodytes chromosome 22 clone PTB-045O21 m... 42 1.2
13gb|AC022568.7| Homo sapiens chromosome 8, clone RP11-10H3, compl... 42 1.2
14gb|M27659.1|SCMESPAB S.haematobium eggshell protein gene ORFs 42 1.2
15gb|M27658.1|SCMESPAA S.haematobium eggshell protein gene ORFs 42 1.2
16gb|AC139170.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7
17gb|BC092206.1| Rattus norvegicus vesicle-associated membrane pro... 40 4.7
18ref|NM_013090.2| Rattus norvegicus vesicle-associated membrane p... 40 4.7
19gb|BC074471.1| Xenopus laevis cDNA clone IMAGE:6950803, partial cds 40 4.7
20emb|AJ426040.1|TRU426040 Takifugu rubripes vader gene, cetn gene... 40 4.7
21gb|S82311.1| putative glycine-rich protein {clone CHEM 11} [Zea ... 40 4.7
22dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
23dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
24dbj|AK119673.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
25dbj|AK099309.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
26dbj|AK064923.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
27gb|AY103756.1| Zea mays PCO151485 mRNA sequence 40 4.7
28gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7
29gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7
30emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536... 40 4.7
31emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510... 40 4.7
32gb|M24104.1|RATVAMPIR Rat vesicle associated membrane protein (V... 40 4.7 
>ref|XM_506148.1| PREDICTED Oryza sativa (japonica cultivar-group), P0474G09.102 mRNA
          Length = 3214

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 74/83 (89%), Gaps = 3/83 (3%)
 Strand = Plus / Minus

                                                                        
Query: 276  gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 332
            ||||||||||||||||||||||||||   ||| ||||| || ||||||||||||||||| 
Sbjct: 2911 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 2852

                                   
Query: 333  ccacgggaaccctggccacccct 355
            |||||||||||||| | ||||||
Sbjct: 2851 ccacgggaaccctgactacccct 2829
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>ref|XM_476451.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3207

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 74/83 (89%), Gaps = 3/83 (3%)
 Strand = Plus / Minus

                                                                        
Query: 276  gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 332
            ||||||||||||||||||||||||||   ||| ||||| || ||||||||||||||||| 
Sbjct: 2904 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 2845

                                   
Query: 333  ccacgggaaccctggccacccct 355
            |||||||||||||| | ||||||
Sbjct: 2844 ccacgggaaccctgactacccct 2822
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 74/83 (89%), Gaps = 3/83 (3%)
 Strand = Plus / Minus

                                                                           
Query: 276     gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 332
               ||||||||||||||||||||||||||   ||| ||||| || ||||||||||||||||| 
Sbjct: 1277414 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 1277355

                                      
Query: 333     ccacgggaaccctggccacccct 355
               |||||||||||||| | ||||||
Sbjct: 1277354 ccacgggaaccctgactacccct 1277332
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>dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0474G09
          Length = 169511

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 74/83 (89%), Gaps = 3/83 (3%)
 Strand = Plus / Minus

                                                                         
Query: 276   gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 332
             ||||||||||||||||||||||||||   ||| ||||| || ||||||||||||||||| 
Sbjct: 42249 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 42190

                                    
Query: 333   ccacgggaaccctggccacccct 355
             |||||||||||||| | ||||||
Sbjct: 42189 ccacgggaaccctgactacccct 42167
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>dbj|AK101000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147D18, full
            insert sequence
          Length = 3206

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 74/83 (89%), Gaps = 3/83 (3%)
 Strand = Plus / Minus

                                                                        
Query: 276  gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 332
            ||||||||||||||||||||||||||   ||| ||||| || ||||||||||||||||| 
Sbjct: 2903 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 2844

                                   
Query: 333  ccacgggaaccctggccacccct 355
            |||||||||||||| | ||||||
Sbjct: 2843 ccacgggaaccctgactacccct 2821
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>dbj|AK070529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060K11, full
            insert sequence
          Length = 3214

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 74/83 (89%), Gaps = 3/83 (3%)
 Strand = Plus / Minus

                                                                        
Query: 276  gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 332
            ||||||||||||||||||||||||||   ||| ||||| || ||||||||||||||||| 
Sbjct: 2911 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 2852

                                   
Query: 333  ccacgggaaccctggccacccct 355
            |||||||||||||| | ||||||
Sbjct: 2851 ccacgggaaccctgactacccct 2829
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>ref|XM_463934.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2784

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 300  ccatcctggaaccgagaaccaccaccatagccgccacgggaaccctg 346
            ||||||||||| || ||||||||||||||||| ||||| ||||||||
Sbjct: 2714 ccatcctggaagcgtgaaccaccaccatagcctccacgagaaccctg 2668
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                              
Query: 300     ccatcctggaaccgagaaccaccaccatagccgccacgggaaccctg 346
               ||||||||||| || ||||||||||||||||| ||||| ||||||||
Sbjct: 1222640 ccatcctggaagcgtgaaccaccaccatagcctccacgagaaccctg 1222594
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>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0575F10
          Length = 150462

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                            
Query: 300   ccatcctggaaccgagaaccaccaccatagccgccacgggaaccctg 346
             ||||||||||| || ||||||||||||||||| ||||| ||||||||
Sbjct: 53731 ccatcctggaagcgtgaaccaccaccatagcctccacgagaaccctg 53685
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>gb|BT018635.1| Zea mays clone EL01N0504B06.d mRNA sequence
          Length = 1657

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                        
Query: 281  agactggttgcgagaccttccatcctggaaccgagaaccaccaccatagccgccacggga 340
            |||||||||||||  |||| ||||||| ||||  ||| | ||||||||||| || ||| |
Sbjct: 1331 agactggttgcgaccccttgcatcctgaaaccttgaaacgccaccatagcccccgcggta 1272

                  
Query: 341  accctg 346
            ||||||
Sbjct: 1271 accctg 1266
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>emb|AL954241.1| Pan troglodytes chromosome 22 clone RP43-181I17 map 22q22.2-q22.3,
             complete sequence
          Length = 212865

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 114   gaagctacaaaaatatagcaa 134
             |||||||||||||||||||||
Sbjct: 27917 gaagctacaaaaatatagcaa 27897
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>emb|AL954240.1| Pan troglodytes chromosome 22 clone PTB-045O21 map 22q22.2-q22.3,
              complete sequence
          Length = 164591

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 114    gaagctacaaaaatatagcaa 134
              |||||||||||||||||||||
Sbjct: 111168 gaagctacaaaaatatagcaa 111148
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>gb|AC022568.7| Homo sapiens chromosome 8, clone RP11-10H3, complete sequence
          Length = 138073

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 100   tatgacagataacagaagcta 120
             |||||||||||||||||||||
Sbjct: 29065 tatgacagataacagaagcta 29045
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>gb|M27659.1|SCMESPAB S.haematobium eggshell protein gene ORFs
          Length = 1038

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 316 aaccaccaccatagccgccac 336
           |||||||||||||||||||||
Sbjct: 699 aaccaccaccatagccgccac 679
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>gb|M27658.1|SCMESPAA S.haematobium eggshell protein gene ORFs
          Length = 962

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 316 aaccaccaccatagccgccac 336
           |||||||||||||||||||||
Sbjct: 623 aaccaccaccatagccgccac 603
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>gb|AC139170.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0058P12, complete sequence
          Length = 173073

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 113   agaagctacaaaaatatagcaaac 136
             |||||||||||||| |||||||||
Sbjct: 52479 agaagctacaaaaaaatagcaaac 52456
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>gb|BC092206.1| Rattus norvegicus vesicle-associated membrane protein 1, mRNA (cDNA
            clone MGC:105480 IMAGE:7313343), complete cds
          Length = 2554

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 102  tgacagataacagaagctacaaaa 125
            ||||||||||||| ||||||||||
Sbjct: 1060 tgacagataacagtagctacaaaa 1037
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>ref|NM_013090.2| Rattus norvegicus vesicle-associated membrane protein 1 (Vamp1), mRNA
          Length = 2650

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 102  tgacagataacagaagctacaaaa 125
            ||||||||||||| ||||||||||
Sbjct: 1162 tgacagataacagtagctacaaaa 1139
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>gb|BC074471.1| Xenopus laevis cDNA clone IMAGE:6950803, partial cds
          Length = 1750

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 317 accaccaccatagccgccac 336
           ||||||||||||||||||||
Sbjct: 371 accaccaccatagccgccac 352
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>emb|AJ426040.1|TRU426040 Takifugu rubripes vader gene, cetn gene, fgf2 gene, gfg gene and spaf
             gene, cosmid 196n09
          Length = 29053

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 108   ataacagaagctacaaaaatatag 131
             ||||||| ||||||||||||||||
Sbjct: 21269 ataacagtagctacaaaaatatag 21246
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>gb|S82311.1| putative glycine-rich protein {clone CHEM 11} [Zea mays=maize, cv.
           INRA 258, mercuric chloride-treated, leaves, mRNA
           Partial, 149 nt]
          Length = 149

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 317 accaccaccatagccgccac 336
           ||||||||||||||||||||
Sbjct: 135 accaccaccatagccgccac 116



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 317 accaccaccatagccgccac 336
           ||||||||||||||||||||
Sbjct: 87  accaccaccatagccgccac 68
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 317      accaccaccatagccgccac 336
                ||||||||||||||||||||
Sbjct: 19173996 accaccaccatagccgccac 19173977
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 113     agaagctacaaaaatatagcaaac 136
               |||||||||||||| |||||||||
Sbjct: 4942414 agaagctacaaaaaaatagcaaac 4942437
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>dbj|AK119673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-G08, full
           insert sequence
          Length = 812

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 317 accaccaccatagccgccac 336
           ||||||||||||||||||||
Sbjct: 204 accaccaccatagccgccac 185
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>dbj|AK099309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146P18, full
           insert sequence
          Length = 1027

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 317 accaccaccatagccgccac 336
           ||||||||||||||||||||
Sbjct: 452 accaccaccatagccgccac 433
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>dbj|AK064923.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000N14, full
           insert sequence
          Length = 1069

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 317 accaccaccatagccgccac 336
           ||||||||||||||||||||
Sbjct: 461 accaccaccatagccgccac 442
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>gb|AY103756.1| Zea mays PCO151485 mRNA sequence
          Length = 637

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 accaccaccatagccgccac 336
           ||||||||||||||||||||
Sbjct: 610 accaccaccatagccgccac 629
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 113     agaagctacaaaaatatagcaaac 136
               |||||||||||||| |||||||||
Sbjct: 4961198 agaagctacaaaaaaatagcaaac 4961221
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 317      accaccaccatagccgccac 336
                ||||||||||||||||||||
Sbjct: 19100223 accaccaccatagccgccac 19100204
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>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 127026

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   accaccaccatagccgccac 336
             ||||||||||||||||||||
Sbjct: 51983 accaccaccatagccgccac 52002
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>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 136155

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 317  accaccaccatagccgccac 336
            ||||||||||||||||||||
Sbjct: 7326 accaccaccatagccgccac 7307
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>gb|M24104.1|RATVAMPIR Rat vesicle associated membrane protein (VAMP-1) mRNA, complete cds
          Length = 1482

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 102  tgacagataacagaagctacaaaa 125
            ||||||||||||| ||||||||||
Sbjct: 1064 tgacagataacagtagctacaaaa 1041


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,612,784
Number of Sequences: 3902068
Number of extensions: 2612784
Number of successful extensions: 75049
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74897
Number of HSP's gapped (non-prelim): 146
length of query: 355
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 333
effective length of database: 17,147,199,772
effective search space: 5710017524076
effective search space used: 5710017524076
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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