>FHAB_BORPE (P12255) Filamentous hemagglutinin|
          Length = 3590

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 42   ITAAMAVQYFQDYLQFSLTANTN*CSHSKGDWKNRNTGERMHHLLD 179
            +    A++YF+  L  SLTA  N    S   W  ++T E + +LLD
Sbjct: 1907 VRTVSAMEYFKTPLPVSLTALDNRAGLSPATWNFQSTYELLDYLLD 1952

>MAGC1_HUMAN (O60732) Melanoma-associated antigen C1 (MAGE-C1 antigen)|
           (Cancer-testis antigen CT7)
          Length = 1142

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 22/71 (30%), Positives = 30/71 (42%)
 Frame = -2

Query: 318 PQLVKEQPAKAGQGGGPTSRVKTKTRQELAGTWRATLPLLPEGDQDYPEDDASSPLYSGF 139
           PQ   E P    +G    S ++       + T  + L    E  Q  PE  A SPL S  
Sbjct: 756 PQSFPESPQSPPEGPAQ-SPLQRPVSSFFSYTLASLLQSSHESPQSPPEGPAQSPLQSPV 814

Query: 138 SSLPSNVNINL 106
           SS PS+ + +L
Sbjct: 815 SSFPSSTSSSL 825

>GAS5_YEAST (Q08193) Glycolipid-anchored surface protein 5 precursor|
          Length = 484

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = -2

Query: 285 GQGGGPTSRVKTKTRQELAGTWRA--TLPLLPEGDQDYPEDDASSPLYSGFSSLPS 124
           G GG  TS   +       G W A  TLP +P     Y    A SP+ +G ++  S
Sbjct: 335 GNGGYSTSNNYSTCPDYEKGVWEANNTLPAMPSAASAYFTSGAGSPMGTGIATQQS 390

>POL2_RRVS (P36324) RNA2 polyprotein (P2) [Contains: P2A protein (2A);|
           Movement protein (2B-MP); Coat protein (2C-CP)]
          Length = 1107

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 47  CGHGGAIFPRLSPILTHGQHKLMFTFE 127
           C     +FP LS +  H QH L+ +FE
Sbjct: 30  CALSSPLFPELSKLDAHSQHHLLASFE 56

>SYD_RHORT (Q2RSM3) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 606

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 270 PTSRVKTKTRQELAGTWRATLPLLPEGDQDYPED 169
           PT  ++ K +     +    LP+   GDQ+YPED
Sbjct: 90  PTGAIEVKAQTVEVLSQSEVLPMQVAGDQEYPED 123

>REPS1_MOUSE (O54916) RalBP1-associated Eps domain-containing protein 1|
           (RalBP1-interacting protein 1)
          Length = 743

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -2

Query: 309 VKEQPAKAGQGGGPTSRVKTKTRQELAGTWRATLPLLPEGDQDYPEDDASSPLYSGFSSL 130
           V EQP + G  G P     +K+            P +P  +Q +PE + SS  +  FS  
Sbjct: 328 VGEQPGEVGYSGSPAEAPPSKS------------PSMPSLNQTWPELNQSSEQWETFSER 375

Query: 129 PSN 121
            S+
Sbjct: 376 SSS 378

>KTNA1_ARATH (Q9SEX2) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)|
           (Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase)
           (Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3
           protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein)
           (AtAAA1)
          Length = 523

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 333 AWARNPQLVKEQPAKAGQGGGPTSRVKTKTRQELAG 226
           AWAR P   +  PA  G  GG TS+     R   AG
Sbjct: 152 AWARGP-TTRTGPASRGGRGGATSKSTAGARSSTAG 186

>YPC1_CAEEL (Q11178) Hypothetical protein C05D10.1|
          Length = 529

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
 Frame = -2

Query: 327 ARNPQLVKEQPAKAGQG-----GGPTSRVKTKTRQELAGTWRATLPLLPEGDQDYPEDDA 163
           + NP+ ++ +P K GQG     GG   ++ T+   E A      +   P     Y   ++
Sbjct: 151 SENPKPIELKPLKLGQGYQMANGGGGGKIHTERLSEPARKQSRKVGFPPPVASYYQRKES 210

Query: 162 SSPLY--SGFSSLPS 124
           S+PL   +  SS+P+
Sbjct: 211 SNPLVPPTPLSSIPN 225

>RPOB_EHRCR (Q8KWX2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1380

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 135  WKNRNTGERMHHLLDNLGRLRVT--REALLSMY 227
            W + N G+++ H+LDNL  L V+  R  L  +Y
Sbjct: 1148 WASVNLGKKIGHILDNLDELTVSHLRNFLYQVY 1180

>POL2_RRVC (Q6W8W3) RNA2 polyprotein (P2) [Contains: P2A protein (2A);|
           Movement protein (2B-MP); Coat protein (2C-CP)]
          Length = 1106

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 47  CGHGGAIFPRLSPILTHGQHKLMFTFE 127
           C     +FP LS +  H QH L+ +FE
Sbjct: 30  CPLSSPLFPELSKLDAHSQHHLLASFE 56

>FOG_DROME (P40795) Protein folded gastrulation precursor [Contains: Protein|
           folded gastrulation; G protein-coupled receptor ligand]
          Length = 730

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = -2

Query: 270 PTSRVKTKTRQELAGTWRATLPLLPEGDQDYPEDDASSPLYSGFSSLPSNVNINLCWP*V 91
           PT  VK +    LAG    + P  P GD DY +D+ S  +    S +P+ +   L  P V
Sbjct: 90  PTDLVKQELI--LAGGSNGSPPPPPIGDYDYGDDEESEEIVYDLSVIPTAMQDGLP-PSV 146

Query: 90  RIGD 79
             GD
Sbjct: 147 GTGD 150

>K1043_HUMAN (Q96AY4) TPR repeat-containing protein KIAA1043|
          Length = 1716

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -2

Query: 300  QPAKAGQGGGPTSRVKTKTRQELAGTWRATLPLLPEGDQDYPEDDASSPLYSGFS 136
            +P    +GGGP  R +   R + A   R+TLP      Q  P  +     Y GFS
Sbjct: 1242 KPEGGSEGGGPGGR-QDHDRSKNAYLQRSTLPRSQLPPQTRPAGNKDEEEYEGFS 1295

>PLXB3_MOUSE (Q9QY40) Plexin-B3 precursor (Plexin-6)|
          Length = 1892

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 330  WARNPQLVKEQPAKAGQGGGPTSRVK 253
            +  NPQLV+ +P+ + +GGG   RV+
Sbjct: 990  YTANPQLVEAEPSVSFRGGGRVIRVR 1015


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,692,906
Number of Sequences: 219361
Number of extensions: 935411
Number of successful extensions: 2811
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2810
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)