>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor|
           [Contains: Nuclear pore complex protein Nup98
           (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore
           complex protein Nup96 (Nucleoporin Nup96) (96 kDa
           nucleoporin)]
          Length = 1729

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 273 EQGVEFISFDGAKGEWKFRVKHFSSYGFGEAEAD 172
           +QG +F  +    G W F+V HFS YG  +++ +
Sbjct: 858 KQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEE 891

>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98|
           kDa nucleoporin)
          Length = 937

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 273 EQGVEFISFDGAKGEWKFRVKHFSSYGFGEAEAD 172
           +QG +F  +    G W F+V HFS YG  +++ +
Sbjct: 857 KQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEE 890

>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)|
          Length = 1778

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 261  EFISFDGAKGEWKFRVKHFSSYGFGEAEAD 172
            EFI F+   G+W F+V+HFS YG  + E +
Sbjct: 918  EFIDFND--GKWIFKVQHFSRYGLLDDEEE 945

>VGLG_BRSV4 (O10684) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 263

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 22/55 (40%), Positives = 29/55 (52%)
 Frame = +3

Query: 3   EGTHSSIQRTKASQPIFSQTRSATSTKAT*NRVFTNHPKEAAITTPIDKATRNQP 167
           + TH+SIQ T  SQP    T S T+     NR  T + K  + +TP+  ATR  P
Sbjct: 97  KSTHTSIQSTTLSQPPNIDTTSGTTYGHPTNR--TQNRKIKSQSTPL--ATRKPP 147

>VGLG_BRSV1 (O10683) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 263

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 22/55 (40%), Positives = 29/55 (52%)
 Frame = +3

Query: 3   EGTHSSIQRTKASQPIFSQTRSATSTKAT*NRVFTNHPKEAAITTPIDKATRNQP 167
           + TH+SIQ T  SQP    T S T+     NR  T + K  + +TP+  ATR  P
Sbjct: 97  KSTHTSIQSTTLSQPPNIDTTSGTTYGHPTNR--TQNRKIKSQSTPL--ATRKPP 147

>BORG2_MOUSE (Q9CQC5) Cdc42 effector protein 3 (Binder of Rho GTPases 2)|
          Length = 254

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 49  YSPRPDQLHRPKLHRIECSPIIQKRQQLQHLSIKLQGISQG 171
           +  + +   RPKL R+ C P+++++ Q Q   ++   + QG
Sbjct: 128 FHSKQESFGRPKLPRLSCEPVMEEKVQEQSSLLENGAVHQG 168

>NU145_YEAST (P49687) Nucleoporin NUP145 precursor (EC 3.4.21.-) (Nuclear pore|
           protein NUP145) [Contains: Nucleoporin NUP145N
           (N-NUP145); Nucleoporin NUP145C (C-NUP145)]
          Length = 1317

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 264 VEFISFDGAKGEWKFRVKHFSSYGF-GEAEADPLADSL 154
           + +IS++   G W F+V HFS +G   E +A+   D L
Sbjct: 586 MNYISYNPFGGTWTFKVNHFSIWGLVNEEDAEIDEDDL 623

>ABDB_DROME (P09087) Homeobox protein abdominal-B (P3) (Infraabdominal 7)|
           (IAB-7) (PH189)
          Length = 493

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
 Frame = +1

Query: 28  EQKHHNQYSPRPDQLHRPKLHRIECSPIIQKRQQLQHL-------SIKLQGISQGVGFGF 186
           +Q HH+ +   P  LH    H      + Q++QQ QH        S+  Q   Q      
Sbjct: 29  QQLHHHAHHHLPQPLHTTSHHHSAHPHLQQQQQQQQHAVVASSPSSVLQQQQQQSTPTTH 88

Query: 187 TKPVGAEVLHSELPLALGAIKRDKL 261
           + P  A +     P+ L A+++  L
Sbjct: 89  STPTHAVMYEDPPPVPLVAVQQQHL 113

>CXI8_CONRA (Q7Z091) I-superfamily conotoxin R11.8 (r11d)|
          Length = 41

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 158 PCSFIDRCCNCCL 120
           PCS+   CCNCCL
Sbjct: 8   PCSYHADCCNCCL 20

>CXI17_CONRA (Q7Z093) I-superfamily conotoxin R11.17|
          Length = 46

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 158 PCSFIDRCCNCCL 120
           PCS+   CCNCCL
Sbjct: 11  PCSYHADCCNCCL 23

>CXI14_CONRA (Q7Z092) I-superfamily conotoxin R11.14 (r11b)|
          Length = 46

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 158 PCSFIDRCCNCCL 120
           PCS+   CCNCCL
Sbjct: 11  PCSYHADCCNCCL 23

>ZCHC8_MOUSE (Q9CYA6) Zinc finger CCHC domain-containing protein 8|
          Length = 709

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 68  SYIDQSYIESSVHQSSKRGSNYNTYR*SYKESARGSASASPNP*EL 205
           SY++ +    S+  S KR S+ ++     K+   GSA+ASP   EL
Sbjct: 403 SYLNSNIQSPSMRSSGKRSSSQSSPNSPKKQRKEGSAAASPADMEL 448

>CXI7_CONRA (Q7Z095) I-superfamily conotoxin R11.7|
          Length = 46

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 158 PCSFIDRCCNCCL 120
           PC +   CCNCCL
Sbjct: 11  PCEYHSDCCNCCL 23


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,822,188
Number of Sequences: 219361
Number of extensions: 761645
Number of successful extensions: 2376
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2376
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)