ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE014852.2| Plasmodium falciparum 3D7 chromosome 12, section ... 40 3.6
2emb|AL392184.7| Human DNA sequence from clone RP3-382B1 on chrom... 40 3.6
3emb|AL157829.24| Human DNA sequence from clone RP11-305F14 on ch... 40 3.6
4gb|AC156611.10| Mus musculus chromosome 5, clone RP23-163P2, com... 40 3.6
5emb|BX324004.6| Zebrafish DNA sequence from clone CH211-284O17 i... 40 3.6
6dbj|AK140922.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 3.6
7gb|AC171007.3| Gallus gallus BAC clone CH261-166I11 from chromos... 40 3.6
8gb|AC090950.3| Homo sapiens chromosome 3 clone RP11-44D5 map 3p,... 40 3.6
9dbj|AK090011.1| Mus musculus RCB-0464 Meth-A cDNA, RIKEN full-le... 40 3.6
10gb|AC148019.5| Mus musculus BAC clone RP23-12B6 from chromosome ... 40 3.6
11emb|AL954339.10| Zebrafish DNA sequence from clone CH211-221J21 ... 40 3.6
12emb|AL117192.5|CNS01DRE Human chromosome 14 DNA sequence BAC R-8... 40 3.6
13gb|AC154200.1| Mus musculus BAC clone RP24-81G10 from 17, comple... 40 3.6
14gb|AC102056.17| Mus musculus chromosome 5, clone RP23-190H2, com... 40 3.6

>gb|AE014852.2| Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete
              sequence
          Length = 260929

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    aaagcaacaaacatagctgc 129
              ||||||||||||||||||||
Sbjct: 204833 aaagcaacaaacatagctgc 204852



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>emb|AL392184.7| Human DNA sequence from clone RP3-382B1 on chromosome 6 Contains part
            of the gene for phenylalanine-tRNA synthetase (FARS1),
            complete sequence
          Length = 42892

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 254  caccaacaacagaaaaccct 273
            ||||||||||||||||||||
Sbjct: 7580 caccaacaacagaaaaccct 7561



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>emb|AL157829.24| Human DNA sequence from clone RP11-305F14 on chromosome 9 Contains part
              of the ASTN2 gene for astrotactin2 (KIAA0634), and a CpG
              island, complete sequence
          Length = 162575

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     cagagtgcagcccaagggcg 57
              ||||||||||||||||||||
Sbjct: 132033 cagagtgcagcccaagggcg 132014



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>gb|AC156611.10| Mus musculus chromosome 5, clone RP23-163P2, complete sequence
          Length = 200155

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    gaaaaggtaaaagcaacaaa 120
              ||||||||||||||||||||
Sbjct: 154534 gaaaaggtaaaagcaacaaa 154515



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>emb|BX324004.6| Zebrafish DNA sequence from clone CH211-284O17 in linkage group 12,
             complete sequence
          Length = 136645

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   taggtggggcaatggcacca 258
             ||||||||||||||||||||
Sbjct: 52065 taggtggggcaatggcacca 52084



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>dbj|AK140922.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130072C02 product:unclassifiable, full
            insert sequence
          Length = 4219

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  aaaggtaaaagcaacaaaca 122
            ||||||||||||||||||||
Sbjct: 3333 aaaggtaaaagcaacaaaca 3314



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>gb|AC171007.3| Gallus gallus BAC clone CH261-166I11 from chromosome ul, complete
              sequence
          Length = 223327

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      caaccactctcagtttttac 28
              ||||||||||||||||||||
Sbjct: 160161 caaccactctcagtttttac 160142



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>gb|AC090950.3| Homo sapiens chromosome 3 clone RP11-44D5 map 3p, complete sequence
          Length = 199288

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    gtaaaagcaacaaacatagc 126
              ||||||||||||||||||||
Sbjct: 148821 gtaaaagcaacaaacatagc 148840



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>dbj|AK090011.1| Mus musculus RCB-0464 Meth-A cDNA, RIKEN full-length enriched
            library, clone:G430059M05 product:RIKEN cDNA 2010110K24
            gene, full insert sequence
          Length = 1597

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  aaaggtaaaagcaacaaaca 122
            ||||||||||||||||||||
Sbjct: 1467 aaaggtaaaagcaacaaaca 1448



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>gb|AC148019.5| Mus musculus BAC clone RP23-12B6 from chromosome 18, complete sequence
          Length = 211149

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    ctaatttctgtccaaagtca 198
              ||||||||||||||||||||
Sbjct: 127159 ctaatttctgtccaaagtca 127140



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>emb|AL954339.10| Zebrafish DNA sequence from clone CH211-221J21 in linkage group 12,
              complete sequence
          Length = 203958

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 239    taggtggggcaatggcacca 258
              ||||||||||||||||||||
Sbjct: 152628 taggtggggcaatggcacca 152609



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>emb|AL117192.5|CNS01DRE Human chromosome 14 DNA sequence BAC R-862G15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 210869

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    aggtggggcaatggcaccaa 259
              ||||||||||||||||||||
Sbjct: 174610 aggtggggcaatggcaccaa 174629



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>gb|AC154200.1| Mus musculus BAC clone RP24-81G10 from 17, complete sequence
          Length = 216721

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    aaaggtaaaagcaacaaaca 122
              ||||||||||||||||||||
Sbjct: 122665 aaaggtaaaagcaacaaaca 122646



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>gb|AC102056.17| Mus musculus chromosome 5, clone RP23-190H2, complete sequence
          Length = 184495

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   gaaaaggtaaaagcaacaaa 120
             ||||||||||||||||||||
Sbjct: 37005 gaaaaggtaaaagcaacaaa 36986


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,222,468
Number of Sequences: 3902068
Number of extensions: 2222468
Number of successful extensions: 40432
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40411
Number of HSP's gapped (non-prelim): 21
length of query: 273
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 251
effective length of database: 17,147,199,772
effective search space: 4303947142772
effective search space used: 4303947142772
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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