ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl17e02 |
|---|---|
| Clone Library Name | barley_pub |
>PT494_SACBA (O59961) COX3 mRNA-specific translational activator PET494| Length = 489 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = -2 Query: 319 RAEETSPQEDSVERKERKCCIACFSKTPSFLALFVPFSALLFDST 185 R E+ SP +++ + E+K C SK LAL S + DS+ Sbjct: 445 RDEDRSPVLNTIPQAEKKTCYQILSKNRDILALLKRISDIQIDSS 489
>DUET_HUMAN (Q9Y2A5) Serine/threonine-protein kinase Duet (EC 2.7.11.1)| (Serine/threonine kinase with Dbl- and pleckstrin homology domain) Length = 1289 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = -2 Query: 391 RQTTYQRERRNKDLGASRPDHVARRAEETSPQEDSVERKERK 266 +Q + R++ DLG+ +P +ET+PQ DS + K +K Sbjct: 92 KQKKVRDGRKSFDLGSPKP------GDETTPQGDSADEKSKK 127
>HAPIP_RAT (P97924) Huntingtin-associated protein-interacting protein (Protein| Duo) (Kalirin) (PAM COOH-terminal interactor protein 10) (P-CIP10) Length = 1919 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = -2 Query: 391 RQTTYQRERRNKDLGASRPDHVARRAEETSPQEDSVERKERK 266 +Q + R++ DLG+ +P +ET+PQ DS + K +K Sbjct: 1782 KQKKVRDGRKSFDLGSPKP------GDETTPQGDSADEKSKK 1817
>RAD50_MOUSE (P70388) DNA repair protein RAD50 (EC 3.6.-.-) (mRad50)| Length = 1312 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = -2 Query: 397 RLRQTTYQRERRNKDLGASRPDHVARRAEETSPQEDSVERKER 269 +L + RE+ NKD+G R D ++ +E Q++ RK R Sbjct: 986 QLNECEKHREKINKDMGTMRQDIDTQKIQERWLQDNLTLRKRR 1028
>SYR_THETN (Q8R786) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 562 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = +3 Query: 210 KGTNKARKEGVLEKQAIQHFLSFLSTESSWGDVSS--ARLATWSGRLAPRSL 359 K N+A+KEG+L ++IQ E GD+++ A + ++APR + Sbjct: 18 KALNEAKKEGLLNFESIQDVEVEEPKEKQHGDLATNFAMVMAREAKMAPRKI 69
>Y1262_AQUAE (O67301) Hypothetical lipoprotein aq_1262 precursor| Length = 564 Score = 27.3 bits (59), Expect = 9.0 Identities = 9/29 (31%), Positives = 18/29 (62%) Frame = +3 Query: 21 PILFMIIHSCAAGVTRTKKMLRQKRRHVP 107 P+L +++SC G + +K+ + K+ H P Sbjct: 13 PVLLSLLYSCGTGGSASKEEILSKKEHNP 41
>VIT_ANTGR (Q05808) Vitellogenin precursor [Contains: YP47; YP160]| Length = 1790 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -2 Query: 328 VARRAEETSPQEDSVERKERKCCIACFSKTPSFLALFVPFSALLF 194 ++R + T P++ S E K R + C KT S L+ PF ++ Sbjct: 963 ISRNNKLTKPEQISTEIKAR---VTCTGKTQSHLSFVTPFDHQIY 1004
>PSTB_BACFR (Q64SM5) Phosphate import ATP-binding protein pstB (EC 3.6.3.27)| (Phosphate-transporting ATPase) (ABC phosphate transporter) Length = 253 Score = 27.3 bits (59), Expect = 9.0 Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 3/99 (3%) Frame = -2 Query: 394 LRQTTYQRERRNKDL-GASRPDHVARRAEETSPQEDSVERKERKCCIACFSKTPSFLALF 218 ++ + R+R + L GA+ D V + +E S S +++R C + +PS L + Sbjct: 116 VKDNAFIRQRVEETLKGAALWDEVKDKLKE-SAFALSGGQQQRLCIARAMAVSPSVLLMD 174 Query: 217 VPFSALLFDSTSQVEP--HSLIDQDLHLIVRDSL*RSSR 107 P SAL ST++VE H L ++ +IV ++ +++R Sbjct: 175 EPASALDPISTAKVEELIHELKERYTIVIVTHNMQQAAR 213
>Y923_METJA (Q58333) Hypothetical protein MJ0923| Length = 297 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -2 Query: 280 RKERKCCIACFSKTPSFLALFVPF 209 RK+RK F T SFL +F+PF Sbjct: 8 RKDRKMLFLMFIGTVSFLFIFIPF 31
>AT2B3_RAT (Q64568) Plasma membrane calcium-transporting ATPase 3 (EC 3.6.3.8)| (PMCA3) (Plasma membrane calcium pump isoform 3) (Plasma membrane calcium ATPase isoform 3) Length = 1258 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = -2 Query: 343 SRPDHVARRAEETSPQEDSVERKERKCCIACFSKTPSFLALFVPFSALLFDST 185 S P H+ S + +E+ E K CI F TP FL + L D T Sbjct: 1148 STPTHIRVVKAFRSSLYEGLEKPESKSCIHNFMATPEFLINDYTHNIPLIDDT 1200
>GLPC_ECOLI (P0A996) Anaerobic glycerol-3-phosphate dehydrogenase subunit C| (G-3-P dehydrogenase) Length = 396 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = -2 Query: 247 SKTPSFLALFVPFSALLFDSTSQVEPHSLIDQDLHLIVRDSL*RSSRGTCRRFCRSI 77 S T ++ PF+ ++ +TS L+D L + R +L + S GT RR+ RS+ Sbjct: 96 SHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSV 152
>GLPC_ECO57 (P0A997) Anaerobic glycerol-3-phosphate dehydrogenase subunit C| (G-3-P dehydrogenase) Length = 396 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = -2 Query: 247 SKTPSFLALFVPFSALLFDSTSQVEPHSLIDQDLHLIVRDSL*RSSRGTCRRFCRSI 77 S T ++ PF+ ++ +TS L+D L + R +L + S GT RR+ RS+ Sbjct: 96 SHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSV 152 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,832,407 Number of Sequences: 219361 Number of extensions: 742783 Number of successful extensions: 2067 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2020 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2065 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
