ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl17d11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL356961.13| Human DNA sequence from clone RP11-450H6 on chromosome 13 Contains two novel genes and two CpG islands, complete sequence Length = 99469 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 ccacggggtcccccagccagggggt 171 ||||||||||||||||||| ||||| Sbjct: 47890 ccacggggtcccccagccacggggt 47914
>gb|AC166171.2| Mus musculus BAC clone RP23-136L14 from chromosome 16, complete sequence Length = 199601 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gtctcatgccacacgggcta 55 |||||||||||||||||||| Sbjct: 163729 gtctcatgccacacgggcta 163710
>gb|AC116772.6| Mus musculus chromosome 8, clone RP23-428C21, complete sequence Length = 232691 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 262 ctgccgagaaaaccactttctata 285 ||||| |||||||||||||||||| Sbjct: 193031 ctgccaagaaaaccactttctata 193008
>emb|Z85995.2|HS384D21 Human DNA sequence from clone RP3-384D21 on chromosome Xq25-26.1 Contains part of the ODZ1 gene for odz, odd Oz/ten-m homolog 1(Drosophila) and a ribosomal protein S26 (RPS26) pseudogene, complete sequence Length = 80696 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 256 gagtttctgccgagaaaaccactt 279 ||||||||||||||||| |||||| Sbjct: 74217 gagtttctgccgagaaatccactt 74194
>gb|AC163630.5| Mus musculus BAC clone RP23-139M2 from chromosome 16, complete sequence Length = 231703 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gtctcatgccacacgggcta 55 |||||||||||||||||||| Sbjct: 39813 gtctcatgccacacgggcta 39794
>gb|AC123816.4| Mus musculus BAC clone RP24-254P6 from 8, complete sequence Length = 197641 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 262 ctgccgagaaaaccactttctata 285 ||||| |||||||||||||||||| Sbjct: 28066 ctgccaagaaaaccactttctata 28043 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,224,051 Number of Sequences: 3902068 Number of extensions: 2224051 Number of successful extensions: 36158 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36150 Number of HSP's gapped (non-prelim): 8 length of query: 359 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 337 effective length of database: 17,147,199,772 effective search space: 5778606323164 effective search space used: 5778606323164 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
