Clone Name | rbastl17d09 |
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Clone Library Name | barley_pub |
>ref|XM_483801.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3145 Score = 155 bits (78), Expect = 1e-34 Identities = 153/178 (85%) Strand = Plus / Minus Query: 156 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 215 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 2907 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2848 Query: 216 taatcatctccgactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 275 ||||||||| ||| |||||||||||||||||||| |||| ||||||| |||||| | Sbjct: 2847 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2788 Query: 276 gagagaatgctgacaccatgcgggatgccacctgaggatttattttgtcgagctgtaa 333 ||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct: 2787 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaa 2730
>dbj|AK066773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081C24, full insert sequence Length = 2519 Score = 155 bits (78), Expect = 1e-34 Identities = 153/178 (85%) Strand = Plus / Minus Query: 156 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 215 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 2325 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2266 Query: 216 taatcatctccgactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 275 ||||||||| ||| |||||||||||||||||||| |||| ||||||| |||||| | Sbjct: 2265 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2206 Query: 276 gagagaatgctgacaccatgcgggatgccacctgaggatttattttgtcgagctgtaa 333 ||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct: 2205 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaa 2148
>dbj|AK064900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L14, full insert sequence Length = 3181 Score = 155 bits (78), Expect = 1e-34 Identities = 153/178 (85%) Strand = Plus / Minus Query: 156 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 215 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 2943 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2884 Query: 216 taatcatctccgactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 275 ||||||||| ||| |||||||||||||||||||| |||| ||||||| |||||| | Sbjct: 2883 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2824 Query: 276 gagagaatgctgacaccatgcgggatgccacctgaggatttattttgtcgagctgtaa 333 ||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct: 2823 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaa 2766
>gb|AY105426.1| Zea mays PCO146438 mRNA sequence Length = 3165 Score = 119 bits (60), Expect = 6e-24 Identities = 120/140 (85%) Strand = Plus / Minus Query: 191 ttttcagagagtccattggctgagataatcatctccgactgggccttagcaagagcttgt 250 ||||| ||||| |||||||| || | ||||||||| |||||||||||||||||||||| Sbjct: 2981 ttttcggagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgt 2922 Query: 251 ctcgtctcgtcatatctcctccatcgagagaatgctgacaccatgcgggatgccacctga 310 || |||| ||| || | |||||| ||||| |||||||| ||||||||||| ||||||||| Sbjct: 2921 ctggtcttgtcgtaccgcctccaccgagaaaatgctgaaaccatgcgggaggccacctga 2862 Query: 311 ggatttattttgtcgagctg 330 || ||||| ||||| ||||| Sbjct: 2861 gggtttatcttgtcaagctg 2842
>gb|BT024073.1| Zea mays clone EL01N0507C07 mRNA sequence Length = 2068 Score = 115 bits (58), Expect = 9e-23 Identities = 115/134 (85%) Strand = Plus / Minus Query: 197 gagagtccattggctgagataatcatctccgactgggccttagcaagagcttgtctcgtc 256 ||||| |||||||| || | ||||||||| |||||||||||||||||||||||| ||| Sbjct: 1849 gagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgtctggtc 1790 Query: 257 tcgtcatatctcctccatcgagagaatgctgacaccatgcgggatgccacctgaggattt 316 | ||| || | |||||| ||||| |||||||| ||||||||||| ||||||||||| ||| Sbjct: 1789 ttgtcgtaccgcctccaccgagaaaatgctgaaaccatgcgggaggccacctgagggttt 1730 Query: 317 attttgtcgagctg 330 || ||||| ||||| Sbjct: 1729 atcttgtcaagctg 1716
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 93.7 bits (47), Expect = 3e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 234 ccttagcaagagcttgtctcgtctcgtcatatctcctccatcgagagaatgctgacacca 293 ||||||||||||||||||| |||| ||||||| |||||| |||||||| |||||||||| Sbjct: 28166495 ccttagcaagagcttgtctgctctcatcatatcgcctccaccgagagaaagctgacacca 28166554 Query: 294 tgcgggatgccacct 308 ||||||| ||||||| Sbjct: 28166555 tgcgggaggccacct 28166569 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 305 acctgaggatttattttgtcgagctgtaa 333 |||||||||||||| ||||| |||||||| Sbjct: 28166653 acctgaggatttatcttgtctagctgtaa 28166681
>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0543D10 Length = 134866 Score = 93.7 bits (47), Expect = 3e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 234 ccttagcaagagcttgtctcgtctcgtcatatctcctccatcgagagaatgctgacacca 293 ||||||||||||||||||| |||| ||||||| |||||| |||||||| |||||||||| Sbjct: 49968 ccttagcaagagcttgtctgctctcatcatatcgcctccaccgagagaaagctgacacca 50027 Query: 294 tgcgggatgccacct 308 ||||||| ||||||| Sbjct: 50028 tgcgggaggccacct 50042 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 305 acctgaggatttattttgtcgagctgtaa 333 |||||||||||||| ||||| |||||||| Sbjct: 50126 acctgaggatttatcttgtctagctgtaa 50154
>ref|XM_715357.1| Candida albicans SC5314 ubiquitin-protein ligase (CaO19_2697), mRNA Length = 5697 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 aggatttattttgtcgagct 329 |||||||||||||||||||| Sbjct: 1094 aggatttattttgtcgagct 1113
>ref|XM_715127.1| Candida albicans SC5314 ubiquitin-protein ligase (CaO19_10212), mRNA Length = 5697 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 aggatttattttgtcgagct 329 |||||||||||||||||||| Sbjct: 1094 aggatttattttgtcgagct 1113
>emb|CR392328.18| Zebrafish DNA sequence from clone DKEYP-108C1 in linkage group 5, complete sequence Length = 182066 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 tggcagaatcaaatttgttt 138 |||||||||||||||||||| Sbjct: 9480 tggcagaatcaaatttgttt 9461
>gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complete sequence Length = 121737 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 taaatacagcagaatatatt 72 |||||||||||||||||||| Sbjct: 89696 taaatacagcagaatatatt 89677
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ccactatagtagcctgttat 41 |||||||||||||||||||| Sbjct: 16754860 ccactatagtagcctgttat 16754841
>gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, complete sequence Length = 156582 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 taaatacagcagaatatatt 72 |||||||||||||||||||| Sbjct: 45601 taaatacagcagaatatatt 45620
>gb|AY190940.1| Drosophila erecta clone DERF01_19_N16 (D1428) genomic sequence Length = 43180 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 52 ctaaatacagcagaatatattcagttaa 79 |||||| |||||||||||||||| |||| Sbjct: 28764 ctaaatgcagcagaatatattcatttaa 28737
>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664F03 Length = 184242 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ccactatagtagcctgttat 41 |||||||||||||||||||| Sbjct: 106347 ccactatagtagcctgttat 106328
>emb|AL079352.3|CNS00M8V Human chromosome 14 DNA sequence BAC R-388G3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176833 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 agacattttcagagagtcca 205 |||||||||||||||||||| Sbjct: 33908 agacattttcagagagtcca 33927 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,073,487 Number of Sequences: 3902068 Number of extensions: 3073487 Number of successful extensions: 70270 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70223 Number of HSP's gapped (non-prelim): 47 length of query: 333 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 311 effective length of database: 17,147,199,772 effective search space: 5332779129092 effective search space used: 5332779129092 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)