ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_483801.1| Oryza sativa (japonica cultivar-group), mRNA 155 1e-34
2dbj|AK066773.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 1e-34
3dbj|AK064900.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 1e-34
4gb|AY105426.1| Zea mays PCO146438 mRNA sequence 119 6e-24
5gb|BT024073.1| Zea mays clone EL01N0507C07 mRNA sequence 115 9e-23
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
7dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
8ref|XM_715357.1| Candida albicans SC5314 ubiquitin-protein ligas... 40 4.4
9ref|XM_715127.1| Candida albicans SC5314 ubiquitin-protein ligas... 40 4.4
10emb|CR392328.18| Zebrafish DNA sequence from clone DKEYP-108C1 i... 40 4.4
11gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complet... 40 4.4
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
13gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, compl... 40 4.4
14gb|AY190940.1| Drosophila erecta clone DERF01_19_N16 (D1428) gen... 40 4.4
15dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
16emb|AL079352.3|CNS00M8V Human chromosome 14 DNA sequence BAC R-3... 40 4.4

>ref|XM_483801.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3145

 Score =  155 bits (78), Expect = 1e-34
 Identities = 153/178 (85%)
 Strand = Plus / Minus

                                                                        
Query: 156  aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 215
            |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 2907 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2848

                                                                        
Query: 216  taatcatctccgactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 275
              |||||||||  ||| ||||||||||||||||||||  |||| ||||||| |||||| |
Sbjct: 2847 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2788

                                                                      
Query: 276  gagagaatgctgacaccatgcgggatgccacctgaggatttattttgtcgagctgtaa 333
            ||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 2787 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaa 2730



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>dbj|AK066773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081C24, full
            insert sequence
          Length = 2519

 Score =  155 bits (78), Expect = 1e-34
 Identities = 153/178 (85%)
 Strand = Plus / Minus

                                                                        
Query: 156  aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 215
            |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 2325 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2266

                                                                        
Query: 216  taatcatctccgactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 275
              |||||||||  ||| ||||||||||||||||||||  |||| ||||||| |||||| |
Sbjct: 2265 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2206

                                                                      
Query: 276  gagagaatgctgacaccatgcgggatgccacctgaggatttattttgtcgagctgtaa 333
            ||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 2205 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaa 2148



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>dbj|AK064900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L14, full
            insert sequence
          Length = 3181

 Score =  155 bits (78), Expect = 1e-34
 Identities = 153/178 (85%)
 Strand = Plus / Minus

                                                                        
Query: 156  aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 215
            |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 2943 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2884

                                                                        
Query: 216  taatcatctccgactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 275
              |||||||||  ||| ||||||||||||||||||||  |||| ||||||| |||||| |
Sbjct: 2883 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2824

                                                                      
Query: 276  gagagaatgctgacaccatgcgggatgccacctgaggatttattttgtcgagctgtaa 333
            ||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 2823 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaa 2766



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>gb|AY105426.1| Zea mays PCO146438 mRNA sequence
          Length = 3165

 Score =  119 bits (60), Expect = 6e-24
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 191  ttttcagagagtccattggctgagataatcatctccgactgggccttagcaagagcttgt 250
            ||||| ||||| |||||||| || |  |||||||||  ||||||||||||||||||||||
Sbjct: 2981 ttttcggagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgt 2922

                                                                        
Query: 251  ctcgtctcgtcatatctcctccatcgagagaatgctgacaccatgcgggatgccacctga 310
            || |||| ||| || | |||||| ||||| |||||||| ||||||||||| |||||||||
Sbjct: 2921 ctggtcttgtcgtaccgcctccaccgagaaaatgctgaaaccatgcgggaggccacctga 2862

                                
Query: 311  ggatttattttgtcgagctg 330
            || ||||| ||||| |||||
Sbjct: 2861 gggtttatcttgtcaagctg 2842



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>gb|BT024073.1| Zea mays clone EL01N0507C07 mRNA sequence
          Length = 2068

 Score =  115 bits (58), Expect = 9e-23
 Identities = 115/134 (85%)
 Strand = Plus / Minus

                                                                        
Query: 197  gagagtccattggctgagataatcatctccgactgggccttagcaagagcttgtctcgtc 256
            ||||| |||||||| || |  |||||||||  |||||||||||||||||||||||| |||
Sbjct: 1849 gagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgtctggtc 1790

                                                                        
Query: 257  tcgtcatatctcctccatcgagagaatgctgacaccatgcgggatgccacctgaggattt 316
            | ||| || | |||||| ||||| |||||||| ||||||||||| ||||||||||| |||
Sbjct: 1789 ttgtcgtaccgcctccaccgagaaaatgctgaaaccatgcgggaggccacctgagggttt 1730

                          
Query: 317  attttgtcgagctg 330
            || ||||| |||||
Sbjct: 1729 atcttgtcaagctg 1716



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                            
Query: 234      ccttagcaagagcttgtctcgtctcgtcatatctcctccatcgagagaatgctgacacca 293
                |||||||||||||||||||  |||| ||||||| |||||| |||||||| ||||||||||
Sbjct: 28166495 ccttagcaagagcttgtctgctctcatcatatcgcctccaccgagagaaagctgacacca 28166554

                               
Query: 294      tgcgggatgccacct 308
                ||||||| |||||||
Sbjct: 28166555 tgcgggaggccacct 28166569



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 305      acctgaggatttattttgtcgagctgtaa 333
                |||||||||||||| ||||| ||||||||
Sbjct: 28166653 acctgaggatttatcttgtctagctgtaa 28166681



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>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0543D10
          Length = 134866

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                         
Query: 234   ccttagcaagagcttgtctcgtctcgtcatatctcctccatcgagagaatgctgacacca 293
             |||||||||||||||||||  |||| ||||||| |||||| |||||||| ||||||||||
Sbjct: 49968 ccttagcaagagcttgtctgctctcatcatatcgcctccaccgagagaaagctgacacca 50027

                            
Query: 294   tgcgggatgccacct 308
             ||||||| |||||||
Sbjct: 50028 tgcgggaggccacct 50042



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 305   acctgaggatttattttgtcgagctgtaa 333
             |||||||||||||| ||||| ||||||||
Sbjct: 50126 acctgaggatttatcttgtctagctgtaa 50154



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>ref|XM_715357.1| Candida albicans SC5314 ubiquitin-protein ligase (CaO19_2697), mRNA
          Length = 5697

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 310  aggatttattttgtcgagct 329
            ||||||||||||||||||||
Sbjct: 1094 aggatttattttgtcgagct 1113



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>ref|XM_715127.1| Candida albicans SC5314 ubiquitin-protein ligase (CaO19_10212), mRNA
          Length = 5697

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 310  aggatttattttgtcgagct 329
            ||||||||||||||||||||
Sbjct: 1094 aggatttattttgtcgagct 1113



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>emb|CR392328.18| Zebrafish DNA sequence from clone DKEYP-108C1 in linkage group 5,
            complete sequence
          Length = 182066

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  tggcagaatcaaatttgttt 138
            ||||||||||||||||||||
Sbjct: 9480 tggcagaatcaaatttgttt 9461



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>gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complete sequence
          Length = 121737

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    taaatacagcagaatatatt 72
             ||||||||||||||||||||
Sbjct: 89696 taaatacagcagaatatatt 89677



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 22       ccactatagtagcctgttat 41
                ||||||||||||||||||||
Sbjct: 16754860 ccactatagtagcctgttat 16754841



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>gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, complete sequence
          Length = 156582

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    taaatacagcagaatatatt 72
             ||||||||||||||||||||
Sbjct: 45601 taaatacagcagaatatatt 45620



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>gb|AY190940.1| Drosophila erecta clone DERF01_19_N16 (D1428) genomic sequence
          Length = 43180

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 52    ctaaatacagcagaatatattcagttaa 79
             |||||| |||||||||||||||| ||||
Sbjct: 28764 ctaaatgcagcagaatatattcatttaa 28737



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>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0664F03
          Length = 184242

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     ccactatagtagcctgttat 41
              ||||||||||||||||||||
Sbjct: 106347 ccactatagtagcctgttat 106328



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>emb|AL079352.3|CNS00M8V Human chromosome 14 DNA sequence BAC R-388G3 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176833

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   agacattttcagagagtcca 205
             ||||||||||||||||||||
Sbjct: 33908 agacattttcagagagtcca 33927


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,073,487
Number of Sequences: 3902068
Number of extensions: 3073487
Number of successful extensions: 70270
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70223
Number of HSP's gapped (non-prelim): 47
length of query: 333
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 311
effective length of database: 17,147,199,772
effective search space: 5332779129092
effective search space used: 5332779129092
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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