>SMBP2_HUMAN (P38935) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (ATP-dependent|
           helicase IGHMBP2) (Immunoglobulin mu-binding protein 2)
           (SMUBP-2) (Glial factor 1) (GF-1)
          Length = 993

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 257 SSQAWKEDGKNLSQQAGRARRISGQEASAPPASGR 361
           S  A K  G   S + G  R+  GQEA+AP   GR
Sbjct: 660 SHAATKPQGPATSTRTGSQRQEGGQEAAAPARQGR 694

>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related
            mesenchymal modulator) (CReMM) (Chromatin remodeling
            factor CHROM1) (Peroxisomal proliferator-activated
            receptor A-inter
          Length = 2897

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 231  SGRPSIVYEAPRLGRRTAKISASRQEEHGAFQARKLQRLQPVEEELDEE 377
            SGR S+V + PR+ ++T   SA++ E         L  L   E E DE+
Sbjct: 1438 SGRNSLVIDTPRIRKQTRPFSATKDE---------LAELSEAESEGDEK 1477

>KR102_HUMAN (P60368) Keratin-associated protein 10-2 (Keratin-associated|
           protein 10.2) (High sulfur keratin-associated protein
           10.2) (Keratin-associated protein 18-2)
           (Keratin-associated protein 18.2)
          Length = 255

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -1

Query: 198 CCAPKFSNGDFVLFLSYV*CFESHSTHA*CVALCCRIFLTMLLVCR-VCIMKATSEF 31
           CC P  S        S   C +S    A C + CCR   ++ L+CR VC   A+  F
Sbjct: 197 CCVPVCSGA------SSPCCQQSSCQPACCTSSCCRPSSSVSLLCRPVCSRPASCSF 247

>PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type-1|
           retrotransposable element R2 (Retrovirus-related Pol
           polyprotein from type I retrotransposable element R2)
           [Includes: Reverse transcriptase (EC 2.7.7.49);
           Endonuclease] (Fragment)
          Length = 606

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 357 PLAGGAEASWPEMRRALPACWLRFLPSSFQAWELHTQLK 241
           PL  GA   WP  R  +P C +  +P++ +A  +HT LK
Sbjct: 543 PLLLGARGIWP--RANVPTCNILSIPTTLRASCVHTCLK 579

>GLUB7_ORYSA (Q52PJ1) Glutelin type-B 7 precursor [Contains: Glutelin type-B 7|
           acidic chain; Glutelin type-B 7 basic chain]
          Length = 495

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 246 IVYEAPRLGRRTAK-ISASRQEEHGAFQARKLQRLQP 353
           +V  A R+ R  A+ I  +R EEHGAF  R  Q+  P
Sbjct: 447 VVANAYRISREQARSIKNNRGEEHGAFTPRFQQQYYP 483

>GLUB2_ORYSA (Q02897) Glutelin type-B 2 precursor [Contains: Glutelin type-B 2|
           acidic chain; Glutelin type-B 2 basic chain]
          Length = 495

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 246 IVYEAPRLGRRTAK-ISASRQEEHGAFQARKLQRLQP 353
           +V  A R+ R  A+ I  +R EEHGAF  R  Q+  P
Sbjct: 447 VVANAYRISREQARSIKNNRGEEHGAFTPRFQQQYYP 483

>SAC3_MOUSE (Q91WF7) SAC domain-containing protein 3|
          Length = 907

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 4   KFIRIYDELKFRGSFHYAYSTN*QHSQEYTTT 99
           +++RI+  +    +F+++YS +  HS +Y  T
Sbjct: 149 RYLRIFQNVDLSSNFYFSYSYDLSHSLQYNLT 180

>SAC3_HUMAN (Q92562) SAC domain-containing protein 3|
          Length = 907

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 4   KFIRIYDELKFRGSFHYAYSTN*QHSQEYTTT 99
           +++RI+  +    +F+++YS +  HS +Y  T
Sbjct: 149 RYLRIFQNVDLSSNFYFSYSYDLSHSLQYNLT 180

>RM12_CRICR (P52827) 39S ribosomal protein L12, mitochondrial precursor (L12mt)|
           (MRP-L12) (P2A1)
          Length = 203

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 258 APRLGRRTAKISASRQEEHGAFQARKL 338
           APRLG R A++  +RQ+  G   AR+L
Sbjct: 13  APRLGLRGARLRLARQQVPGVCAARQL 39

>KHSE_SCHPO (O43056) Probable homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 338

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +3

Query: 213 TVLPDTSGRPSIVYEAPRLGRRTAKISASRQEEHGAFQARKLQRLQPVEEEL 368
           +VLP + GR  +VY   RL   T  +  +    H  ++  K +  QP    L
Sbjct: 213 SVLPTSYGRTDVVYNLQRLALLTTALGQTPINPHLVYEVMKDKVHQPYRASL 264

>DHCR7_BOVIN (Q5E9J5) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC|
           reductase) (Sterol delta-7-reductase)
          Length = 475

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +1

Query: 286 KSQPAG--RKSTAHFRPGSFSASSQWKRSW 369
           KSQP+    KST+    G+ +A  QW R+W
Sbjct: 4   KSQPSAPKTKSTSGLTNGNAAAQGQWGRAW 33

>LMNB1_MOUSE (P14733) Lamin-B1|
          Length = 587

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 20/90 (22%), Positives = 42/90 (46%)
 Frame = +3

Query: 108 HIMHEYCDSQNIKHN*EIVQSLHSKI*VRNKQIQVTVLPDTSGRPSIVYEAPRLGRRTAK 287
           H M E  D+Q   +  E+ Q+ H+K+       ++      S R  ++    R+   +++
Sbjct: 247 HEMREQHDAQVRLYKEELEQTYHAKLENARLSSEMNTSTVNSAREELMESRMRIESLSSQ 306

Query: 288 ISASRQEEHGAFQARKLQRLQPVEEELDEE 377
           +S  ++E         L+R+Q +E+ L +E
Sbjct: 307 LSNLQKESRAC-----LERIQELEDMLAKE 331

>KR106_HUMAN (P60371) Keratin-associated protein 10-6 (Keratin-associated|
           protein 10.6) (High sulfur keratin-associated protein
           10.6) (Keratin-associated protein 18-6)
           (Keratin-associated protein 18.6)
          Length = 365

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query: 207 EFACCAPKFSNGDFVLFLSYV*CFESHSTHA*CVALCCRIFLTMLLVCR-VC 55
           + ACC P  S        S   C +S    A C A CCR   ++ L+C  VC
Sbjct: 267 QHACCVPVCSGA------STSCCQQSSCQPACCTASCCRSSSSVSLLCHPVC 312


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,390,188
Number of Sequences: 219361
Number of extensions: 1133368
Number of successful extensions: 3118
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3117
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)