>UBP8_HUMAN (P40818) Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 8) (Ubiquitin-specific processing
            protease 8) (Deubiquitinating enzyme 8) (hUBPy)
          Length = 1118

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
 Frame = +2

Query: 101  QYKSSRICIT-HKRNTTISQ---ITQPIRSTNKCTYMMKLLLFS 220
            Q+KS+  C+T HK++ T      ++ P+ ST+KCT    L LFS
Sbjct: 929  QFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFS 972

>ENDR_PAEPO (P27871) Probable HTH-type transcriptional regulator endR|
          Length = 340

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +1

Query: 127 YTQKKYHYQSNNTTNKINQQM----YIYDEAAALLHQ 225
           + QK+Y+Y S NT  KI Q +    YI +E A  L Q
Sbjct: 22  FLQKRYNYMSENTKKKIEQAIEDLSYIPNEVARSLKQ 58

>UBP8_MOUSE (Q80U87) Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 8) (Ubiquitin-specific-processing
            protease 8) (Deubiquitinating enzyme 8) (mUBPy)
          Length = 1080

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +2

Query: 101  QYKSSRICITHKRNTTISQ----ITQPIRSTNKCTYMMKLLLFS 220
            Q+KS+  C+T +R +   +    ++ P+ ST+KCT    L LFS
Sbjct: 891  QFKSTVQCLTCRRRSRTFEAFMYLSLPLASTSKCTLQDCLRLFS 934

>LFTR_XYLFT (Q87DL5) Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)|
           (L/F-transferase) (Leucyltransferase)
           (Phenyalanyltransferase)
          Length = 243

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 36  VATGDKYNRSSFFQIHTAVARSNTSQVGYVLHTKEIPL 149
           VA G  +   S F  H   ++   + + Y LHT  +PL
Sbjct: 153 VAIGRMFFGESMFSTHNGASKIALASLAYFLHTHSVPL 190

>ARID2_HUMAN (Q68CP9) AT-rich interactive domain-containing protein 2 (ARID|
            domain-containing protein 2) (BRG1-associated factor 200)
            (BAF200)
          Length = 1835

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 3    DPNQHELHLTSVATGDKYNRSSFFQIHTAVARSNTSQVGYVLHTKEIPL 149
            D  ++E+H+ S+  G KY+ SS    ++   +S T+Q   + +   + L
Sbjct: 1282 DTKENEMHVGSLLNGRKYSDSSLPPSNSGKIQSETNQCSLISNGPSLEL 1330

>STP22_YEAST (P25604) Suppressor protein STP22 of temperature-sensitive|
           alpha-factor receptor and arginine permease (Vacuolar
           protein sorting-associated protein VPS23)
          Length = 385

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 284 IKQGREMSASRYLI*WHL 337
           +KQGRE++  ++L+ WH+
Sbjct: 360 VKQGRELARQQFLVRWHI 377


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,912,746
Number of Sequences: 219361
Number of extensions: 889844
Number of successful extensions: 2265
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2264
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)