ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RIC8A_XENLA (Q45TX8) Synembryn-A (Protein Ric-8A) 30 2.1
2V2A_BBMV (P27462) RNA-directed RNA polymerase 2A (EC 2.7.7.48) (... 29 3.6

>RIC8A_XENLA (Q45TX8) Synembryn-A (Protein Ric-8A)|
          Length = 539

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = +3

Query: 6   RAKRYIDTPTRHEISIVAVIKI*MSFSTTMQLQSLLSPDN*AFQGAILTAYALETTILL- 182
           R K Y +T + HE     +  + +  + ++ ++  L+ +    +G  L   ALE+T+ L 
Sbjct: 148 RLKLYNETRSSHESKFFDLRLLFLLTALSVDMRRQLAQE---LRGVSLLTDALESTLALK 204

Query: 183 YRDLYQILPAHIASSLPRIPTQ 248
           + D+Y+++  H+A  L +  T+
Sbjct: 205 WSDIYEVVTDHLAPPLGKEETE 226



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>V2A_BBMV (P27462) RNA-directed RNA polymerase 2A (EC 2.7.7.48) (protein 2A)|
          Length = 810

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 95  HCCTETHLYFDNSYYRDFMSGRGINVPFSSL 3
           H   +TH YFD+SYY  F      +  F  L
Sbjct: 251 HNALKTHAYFDDSYYEGFEESADFSSDFQRL 281


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,033,854
Number of Sequences: 219361
Number of extensions: 500003
Number of successful extensions: 929
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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