ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_468330.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.013
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.013
3dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.013
4dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.013
5dbj|AK059635.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.013
6gb|AC009327.8|ATAC009327 Arabidopsis thaliana chromosome III BAC... 40 3.1
7emb|AL591375.8| Human DNA sequence from clone RP11-124K13 on chr... 40 3.1
8emb|AL139352.16| Human DNA sequence from clone RP11-445H22 on ch... 40 3.1
9emb|AL078645.31|HSG115G20 Human DNA sequence from clone GS1-115G... 40 3.1
10gb|AC099772.3| Mus Musculus Chromosome 5 RP23-319P12 Strain C57B... 40 3.1
11ref|NM_001017688.1| Danio rerio zgc:112459 (zgc:112459), mRNA 40 3.1
12gb|BC093321.1| Danio rerio zgc:112459, mRNA (cDNA clone MGC:1124... 40 3.1
13gb|AY111893.1| Zea mays CL16453_1 mRNA sequence 40 3.1
14emb|AL773548.10| Mouse DNA sequence from clone RP23-70D2 on chro... 40 3.1

>ref|XM_468330.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2748

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 179  tcaagctctgagctcccggatgtagctggggctcat 214
            ||||||||||||||| ||||||||| | ||||||||
Sbjct: 2748 tcaagctctgagctcacggatgtagttagggctcat 2713



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 179      tcaagctctgagctcccggatgtagctggggctcat 214
                ||||||||||||||| ||||||||| | ||||||||
Sbjct: 34654852 tcaagctctgagctcacggatgtagttagggctcat 34654817



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>dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1116_E04
          Length = 94096

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 179   tcaagctctgagctcccggatgtagctggggctcat 214
             ||||||||||||||| ||||||||| | ||||||||
Sbjct: 11803 tcaagctctgagctcacggatgtagttagggctcat 11768



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>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1112_G06
          Length = 122580

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 179    tcaagctctgagctcccggatgtagctggggctcat 214
              ||||||||||||||| ||||||||| | ||||||||
Sbjct: 121467 tcaagctctgagctcacggatgtagttagggctcat 121432



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>dbj|AK059635.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-A08, full
           insert sequence
          Length = 876

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 179 tcaagctctgagctcccggatgtagctggggctcat 214
           ||||||||||||||| ||||||||| | ||||||||
Sbjct: 623 tcaagctctgagctcacggatgtagttagggctcat 588



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>gb|AC009327.8|ATAC009327 Arabidopsis thaliana chromosome III BAC T12J13 genomic sequence,
             complete sequence
          Length = 89934

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    gttcaaggcttcaagctagt 52
             ||||||||||||||||||||
Sbjct: 33007 gttcaaggcttcaagctagt 32988



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>emb|AL591375.8| Human DNA sequence from clone RP11-124K13 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 84016

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    agagaatacatttctggata 88
             ||||||||||||||||||||
Sbjct: 52699 agagaatacatttctggata 52718



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>emb|AL139352.16| Human DNA sequence from clone RP11-445H22 on chromosome 20 Contains the
             5' end of the ADA gene for adenosine deaminase, a novel
             gene, the 3' end of a novel gene, the WISP2 gene for WNT1
             inducible signaling pathway protein 2 and a CpG island,
             complete sequence
          Length = 107260

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    agcagagaatacatttctgg 85
             ||||||||||||||||||||
Sbjct: 65055 agcagagaatacatttctgg 65074



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>emb|AL078645.31|HSG115G20 Human DNA sequence from clone GS1-115G20 on chromosome 1 Contains part
             of the C1orf21 gene for chromosome 1 open reading frame
             21, a novel pseudogene and a novel transcript, complete
             sequence
          Length = 206089

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    agagaatacatttctggata 88
             ||||||||||||||||||||
Sbjct: 17985 agagaatacatttctggata 17966



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>gb|AC099772.3| Mus Musculus Chromosome 5 RP23-319P12 Strain C57Bl6/J, complete
             sequence
          Length = 190514

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    acagagcagagaatacattt 81
             ||||||||||||||||||||
Sbjct: 43192 acagagcagagaatacattt 43173



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>ref|NM_001017688.1| Danio rerio zgc:112459 (zgc:112459), mRNA
          Length = 1635

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 22 gtgctgatggagttcaaggcttca 45
          |||||| |||||||||||||||||
Sbjct: 23 gtgctgctggagttcaaggcttca 46



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>gb|BC093321.1| Danio rerio zgc:112459, mRNA (cDNA clone MGC:112459
          IMAGE:7406704), complete cds
          Length = 1635

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 22 gtgctgatggagttcaaggcttca 45
          |||||| |||||||||||||||||
Sbjct: 23 gtgctgctggagttcaaggcttca 46



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>gb|AY111893.1| Zea mays CL16453_1 mRNA sequence
          Length = 633

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 179 tcaagctctgagctcccggatgtagctg 206
           ||||||| | ||||||||||||||||||
Sbjct: 335 tcaagctatcagctcccggatgtagctg 362



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>emb|AL773548.10| Mouse DNA sequence from clone RP23-70D2 on chromosome 4, complete
             sequence
          Length = 198991

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    aattttacagagcagagaat 75
             ||||||||||||||||||||
Sbjct: 90954 aattttacagagcagagaat 90973


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,810,972
Number of Sequences: 3902068
Number of extensions: 1810972
Number of successful extensions: 33506
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33476
Number of HSP's gapped (non-prelim): 30
length of query: 242
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 220
effective length of database: 17,147,199,772
effective search space: 3772383949840
effective search space used: 3772383949840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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