Clone Name | rbastl17c08 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_468330.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2748 Score = 48.1 bits (24), Expect = 0.013 Identities = 33/36 (91%) Strand = Plus / Minus Query: 179 tcaagctctgagctcccggatgtagctggggctcat 214 ||||||||||||||| ||||||||| | |||||||| Sbjct: 2748 tcaagctctgagctcacggatgtagttagggctcat 2713
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.013 Identities = 33/36 (91%) Strand = Plus / Minus Query: 179 tcaagctctgagctcccggatgtagctggggctcat 214 ||||||||||||||| ||||||||| | |||||||| Sbjct: 34654852 tcaagctctgagctcacggatgtagttagggctcat 34654817
>dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1116_E04 Length = 94096 Score = 48.1 bits (24), Expect = 0.013 Identities = 33/36 (91%) Strand = Plus / Minus Query: 179 tcaagctctgagctcccggatgtagctggggctcat 214 ||||||||||||||| ||||||||| | |||||||| Sbjct: 11803 tcaagctctgagctcacggatgtagttagggctcat 11768
>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G06 Length = 122580 Score = 48.1 bits (24), Expect = 0.013 Identities = 33/36 (91%) Strand = Plus / Minus Query: 179 tcaagctctgagctcccggatgtagctggggctcat 214 ||||||||||||||| ||||||||| | |||||||| Sbjct: 121467 tcaagctctgagctcacggatgtagttagggctcat 121432
>dbj|AK059635.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-A08, full insert sequence Length = 876 Score = 48.1 bits (24), Expect = 0.013 Identities = 33/36 (91%) Strand = Plus / Minus Query: 179 tcaagctctgagctcccggatgtagctggggctcat 214 ||||||||||||||| ||||||||| | |||||||| Sbjct: 623 tcaagctctgagctcacggatgtagttagggctcat 588
>gb|AC009327.8|ATAC009327 Arabidopsis thaliana chromosome III BAC T12J13 genomic sequence, complete sequence Length = 89934 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gttcaaggcttcaagctagt 52 |||||||||||||||||||| Sbjct: 33007 gttcaaggcttcaagctagt 32988
>emb|AL591375.8| Human DNA sequence from clone RP11-124K13 on chromosome 6 Contains part of a novel gene, complete sequence Length = 84016 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 agagaatacatttctggata 88 |||||||||||||||||||| Sbjct: 52699 agagaatacatttctggata 52718
>emb|AL139352.16| Human DNA sequence from clone RP11-445H22 on chromosome 20 Contains the 5' end of the ADA gene for adenosine deaminase, a novel gene, the 3' end of a novel gene, the WISP2 gene for WNT1 inducible signaling pathway protein 2 and a CpG island, complete sequence Length = 107260 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 agcagagaatacatttctgg 85 |||||||||||||||||||| Sbjct: 65055 agcagagaatacatttctgg 65074
>emb|AL078645.31|HSG115G20 Human DNA sequence from clone GS1-115G20 on chromosome 1 Contains part of the C1orf21 gene for chromosome 1 open reading frame 21, a novel pseudogene and a novel transcript, complete sequence Length = 206089 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 agagaatacatttctggata 88 |||||||||||||||||||| Sbjct: 17985 agagaatacatttctggata 17966
>gb|AC099772.3| Mus Musculus Chromosome 5 RP23-319P12 Strain C57Bl6/J, complete sequence Length = 190514 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 acagagcagagaatacattt 81 |||||||||||||||||||| Sbjct: 43192 acagagcagagaatacattt 43173
>ref|NM_001017688.1| Danio rerio zgc:112459 (zgc:112459), mRNA Length = 1635 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 gtgctgatggagttcaaggcttca 45 |||||| ||||||||||||||||| Sbjct: 23 gtgctgctggagttcaaggcttca 46
>gb|BC093321.1| Danio rerio zgc:112459, mRNA (cDNA clone MGC:112459 IMAGE:7406704), complete cds Length = 1635 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 gtgctgatggagttcaaggcttca 45 |||||| ||||||||||||||||| Sbjct: 23 gtgctgctggagttcaaggcttca 46
>gb|AY111893.1| Zea mays CL16453_1 mRNA sequence Length = 633 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 179 tcaagctctgagctcccggatgtagctg 206 ||||||| | |||||||||||||||||| Sbjct: 335 tcaagctatcagctcccggatgtagctg 362
>emb|AL773548.10| Mouse DNA sequence from clone RP23-70D2 on chromosome 4, complete sequence Length = 198991 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 aattttacagagcagagaat 75 |||||||||||||||||||| Sbjct: 90954 aattttacagagcagagaat 90973 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,810,972 Number of Sequences: 3902068 Number of extensions: 1810972 Number of successful extensions: 33506 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33476 Number of HSP's gapped (non-prelim): 30 length of query: 242 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 220 effective length of database: 17,147,199,772 effective search space: 3772383949840 effective search space used: 3772383949840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)