ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl17c07 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 125 bits (313), Expect = 4e-29 Identities = 60/60 (100%), Positives = 60/60 (100%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI Sbjct: 803 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 105 bits (261), Expect = 4e-23 Identities = 52/60 (86%), Positives = 54/60 (90%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 FSDRLVEIE KVVGMN D LKNRNGPA+FPYMLLYPNTSD GAAAG+TAKGIPNSISI Sbjct: 807 FSDRLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 94.0 bits (232), Expect = 9e-20 Identities = 45/60 (75%), Positives = 52/60 (86%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 FS +LVEIESKV+ MN DP LKNR GPA FPY L++PNTSD+KGAA G+TA+GIPNSISI Sbjct: 804 FSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 89.4 bits (220), Expect = 2e-18 Identities = 44/60 (73%), Positives = 47/60 (78%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 F RL EIES+VV MN DP KNR GP FPY LLYPNTSD KG AAGL+A+GIPNSISI Sbjct: 811 FGARLTEIESRVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 78.2 bits (191), Expect = 5e-15 Identities = 40/61 (65%), Positives = 45/61 (73%), Gaps = 1/61 (1%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSD-HKGAAAGLTAKGIPNSIS 85 F RLV+IE+++ MN + LKNRNGP K PYMLLYPNTSD K GLTA GIPNSIS Sbjct: 817 FGSRLVDIENRIKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSIS 876 Query: 84 I 82 I Sbjct: 877 I 877
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 64.7 bits (156), Expect = 6e-11 Identities = 32/60 (53%), Positives = 38/60 (63%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 F +L EIE K++G N D L+NRNGP K PY +L P D GLT +GIPNSISI Sbjct: 808 FGQKLKEIEEKIMGRNKDSSLRNRNGPVKMPYTVLLPTCEDE-----GLTFRGIPNSISI 862
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 62.8 bits (151), Expect = 2e-10 Identities = 30/60 (50%), Positives = 42/60 (70%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 F ++L EIE K+ N+D +L+NR+GP + PY LLYP++ + GLT +GIPNSISI Sbjct: 808 FGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSKE------GLTFRGIPNSISI 861
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 62.8 bits (151), Expect = 2e-10 Identities = 31/60 (51%), Positives = 39/60 (65%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 F +L EIE K+ N+D L+NR GP K PY LLYP++ + GLT +GIPNSISI Sbjct: 813 FGKKLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYPSSEE------GLTCRGIPNSISI 866
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 62.8 bits (151), Expect = 2e-10 Identities = 32/60 (53%), Positives = 40/60 (66%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 F +L EIE K++ N D L+NR GPAK PY LLYP++ + GLT +GIPNSISI Sbjct: 800 FGKKLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSEE------GLTFRGIPNSISI 853
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 59.7 bits (143), Expect = 2e-09 Identities = 32/61 (52%), Positives = 42/61 (68%), Gaps = 1/61 (1%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELK-NRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSIS 85 F ++L EIE K+V N+DP L+ NR GP + PY LLYP++ + GLT +GIPNSIS Sbjct: 785 FGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEE------GLTFRGIPNSIS 838 Query: 84 I 82 I Sbjct: 839 I 839
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 59.7 bits (143), Expect = 2e-09 Identities = 29/60 (48%), Positives = 41/60 (68%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 F ++L EIE+K+ N+DP L +R GP + PY LL+P++ + GLT +GIPNSISI Sbjct: 811 FGNKLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSKE------GLTFRGIPNSISI 864
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 59.3 bits (142), Expect = 2e-09 Identities = 30/60 (50%), Positives = 36/60 (60%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 F +L IE K+ N DP L+NR GP + PY LL H+ + GLT KGIPNSISI Sbjct: 811 FGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLL------HRSSEEGLTFKGIPNSISI 864
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 58.9 bits (141), Expect = 3e-09 Identities = 30/60 (50%), Positives = 38/60 (63%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 F ++L EIE K+ N+D L NR GP + PY LL+PN+ GLT +GIPNSISI Sbjct: 813 FGNKLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHPNSE-------GLTCRGIPNSISI 865
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 56.6 bits (135), Expect = 2e-08 Identities = 28/60 (46%), Positives = 41/60 (68%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 F ++L +IE+K+ N+D +L+NR GP + PY LL P++ + GLT +GIPNSISI Sbjct: 804 FGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKE------GLTFRGIPNSISI 857
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 54.7 bits (130), Expect = 6e-08 Identities = 27/60 (45%), Positives = 37/60 (61%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 F L +IE++++ MN KNR+GP PY LL+P + + GLT KGIPNS+SI Sbjct: 806 FGKMLSDIENRIMIMNSHKSWKNRSGPVNVPYTLLFPTSEE------GLTGKGIPNSVSI 859
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 54.7 bits (130), Expect = 6e-08 Identities = 27/60 (45%), Positives = 36/60 (60%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 F +L +IE +++ N D L NR+GP PY LL+P + GLT KGIPNS+SI Sbjct: 808 FGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSE------GGLTGKGIPNSVSI 861
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 54.3 bits (129), Expect = 8e-08 Identities = 27/54 (50%), Positives = 35/54 (64%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGI 100 F +L EIE K+V N+D L+NR GPAK PY LLYP++ + GLT +GI Sbjct: 694 FGKKLAEIEKKLVQKNNDETLRNRTGPAKMPYTLLYPSSEE------GLTFRGI 741
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 52.8 bits (125), Expect = 2e-07 Identities = 26/60 (43%), Positives = 36/60 (60%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 F +++ EIE + N D LKNR G K PY LL+P++ G+T +GIPNS+SI Sbjct: 806 FGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSE------GGVTGRGIPNSVSI 859
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 52.4 bits (124), Expect = 3e-07 Identities = 26/60 (43%), Positives = 36/60 (60%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 F ++L +IE +++ N + L NR GP PY LL+P + GLT KGIPNS+SI Sbjct: 807 FGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSE------GGLTGKGIPNSVSI 860
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 48.1 bits (113), Expect = 6e-06 Identities = 28/60 (46%), Positives = 34/60 (56%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 F+ RL EIE + G N D +LKNR G PY L+ P + AG+T GIPNS SI Sbjct: 888 FTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSD------AGVTGMGIPNSTSI 941
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 47.0 bits (110), Expect = 1e-05 Identities = 27/60 (45%), Positives = 34/60 (56%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 F+ RL EIE + G N D +LKNR G PY L+ P + +G+T GIPNS SI Sbjct: 871 FAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSD------SGVTGMGIPNSTSI 924
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 46.6 bits (109), Expect = 2e-05 Identities = 28/60 (46%), Positives = 34/60 (56%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 FS RL E E + N++PE KNR G PY LL P + G+T +GIPNSISI Sbjct: 843 FSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSE------PGVTGRGIPNSISI 896
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 40.0 bits (92), Expect = 0.002 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGA----AAGLTAKGIPN 94 F + +I +V N+DP+ KNR+G PY+LL P+ D + GIPN Sbjct: 873 FKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPN 932 Query: 93 SISI 82 SISI Sbjct: 933 SISI 936
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = -3 Query: 237 ESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 E ++ N DP +NR G PY L+ P+ + G+T +G+PNS++I Sbjct: 854 EEEIERRNADPSRRNRCGAGVLPYELMAPS------SGPGITCRGVPNSVTI 899
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 37.4 bits (85), Expect = 0.010 Identities = 22/60 (36%), Positives = 31/60 (51%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 F ++ +I +V N D +NR+G PY+LL P + A + GIPNSISI Sbjct: 874 FQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKT-VMEMGIPNSISI 932
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 36.2 bits (82), Expect = 0.023 Identities = 21/52 (40%), Positives = 27/52 (51%) Frame = -3 Query: 237 ESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 E + N D KNR G PY LL P++ G+T +G+PNSISI Sbjct: 873 EETIERRNADHGRKNRCGAGVLPYELLAPSSPP------GVTCRGVPNSISI 918
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 34.7 bits (78), Expect = 0.066 Identities = 24/60 (40%), Positives = 31/60 (51%) Frame = -3 Query: 261 FSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 82 F +L +E + N + LKNR G Y LL P TS+H G+T G+P SISI Sbjct: 843 FKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKP-TSEH-----GVTGMGVPYSISI 896
>TTDN1_HUMAN (Q8TAP9) TTD nonphotosensitive 1 protein| Length = 179 Score = 29.3 bits (64), Expect = 2.8 Identities = 17/55 (30%), Positives = 21/55 (38%) Frame = -2 Query: 253 PAGGDREQGGGHEP*PGAQEPQRPG*VSLHAALPQHLRPQGRRCRAYRQGHPQQH 89 P GG G PG P+ P + + P H P G R R Y H +H Sbjct: 16 PGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGS-PHHTPPYGPRSRPYGSSHSPRH 69
>CAD16_MOUSE (O88338) Cadherin-16 precursor (Kidney-specific cadherin)| (Ksp-cadherin) Length = 830 Score = 28.5 bits (62), Expect = 4.7 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -3 Query: 228 VVGMNHDPELKNRNGPAKF 172 V G++ DP+L NRNGP F Sbjct: 688 VSGVSEDPDLANRNGPYSF 706
>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)| Length = 1336 Score = 28.1 bits (61), Expect = 6.2 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -2 Query: 208 PGAQEPQRPG*VSLHAALPQHLRPQGRRCRAYRQGHPQQH 89 PGA E +RPG P+ R +GRR ++R+G P +H Sbjct: 1074 PGAWEGRRPGDERFPRD-PEDPRFRGRREESFRRGAPPRH 1112
>Y2172_STRP8 (P60362) UPF0297 protein spyM18_2172| Length = 89 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +2 Query: 20 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 145 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y2114_STRP1 (P68886) UPF0297 protein SPy2114/M5005_Spy1797| Length = 89 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +2 Query: 20 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 145 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y1798_STRP3 (P60361) UPF0297 protein SpyM3_1798/SPs1796| Length = 89 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +2 Query: 20 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 145 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y1796_STRP6 (Q5X9I2) UPF0297 protein M6_Spy1796| Length = 89 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +2 Query: 20 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 145 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y1781_STRPM (Q48QW9) UPF0297 protein M28_Spy1781| Length = 89 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +2 Query: 20 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 145 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>EBNA1_EBV (P03211) Epstein-Barr nuclear antigen 1 (EBV nuclear antigen 1)| (EBNA-1) Length = 641 Score = 27.7 bits (60), Expect = 8.1 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = -2 Query: 259 QRPAGGDREQGGGHEP*PGAQEPQRPG*VSLHAALPQHLRPQGRR 125 +R GG RE+ G G + P+ P S + P P GRR Sbjct: 359 ERARGGSRERARGRGRGRGEKRPRSPSSQSSSSGSPPRRPPPGRR 403 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,083,730 Number of Sequences: 219361 Number of extensions: 581120 Number of successful extensions: 1485 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 1429 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1464 length of database: 80,573,946 effective HSP length: 63 effective length of database: 66,754,203 effective search space used: 1602100872 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
