>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 79      ttattagcattacgccaaaataagggtaatgccac 113
               |||||||| |||| ||||||||||||| |||||||
Sbjct: 7960236 ttattagccttacaccaaaataagggtgatgccac 7960202

>dbj|AK085834.1| Mus musculus 16 days neonate heart cDNA, RIKEN full-length enriched
           library, clone:D830015E21 product:unclassifiable, full
           insert sequence
          Length = 2776

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 11  ttttattacatgcttatttatat 33
           |||||||||||||||||||||||
Sbjct: 965 ttttattacatgcttatttatat 943

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 79      ttattagcattacgccaaaataagggtaatgccac 113
               |||||||| |||| ||||||||||||| |||||||
Sbjct: 7958071 ttattagccttacaccaaaataagggtgatgccac 7958037

>gb|AC134240.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0081I10, complete sequence
          Length = 143298

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 79    ttattagcattacgccaaaataagggtaatgccac 113
             |||||||| |||| ||||||||||||| |||||||
Sbjct: 27599 ttattagccttacaccaaaataagggtgatgccac 27565

>gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030J04,
              complete sequence
          Length = 153431

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 79     ttattagcattacgccaaaataagggtaatgccac 113
              |||||||| |||| ||||||||||||| |||||||
Sbjct: 145834 ttattagccttacaccaaaataagggtgatgccac 145800

>gb|AC156272.6| Mus musculus 10 BAC RP24-244K5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 166962

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 11     ttttattacatgcttatttatat 33
              |||||||||||||||||||||||
Sbjct: 111652 ttttattacatgcttatttatat 111630

>dbj|AK119298.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E09, full
            insert sequence
          Length = 3025

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 79   ttattagcattacgccaaaataagggtaatgccac 113
            |||||||| |||| ||||||||||||| |||||||
Sbjct: 2893 ttattagccttacaccaaaataagggtgatgccac 2859

>dbj|AK101151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027C12, full
            insert sequence
          Length = 3018

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 79   ttattagcattacgccaaaataagggtaatgccac 113
            |||||||| |||| ||||||||||||| |||||||
Sbjct: 2886 ttattagccttacaccaaaataagggtgatgccac 2852

>emb|CR846083.9| Zebrafish DNA sequence from clone DKEYP-34A6 in linkage group 14,
              complete sequence
          Length = 163337

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 12     tttattacatgcttatttatat 33
              ||||||||||||||||||||||
Sbjct: 161153 tttattacatgcttatttatat 161132

>emb|BX294444.7| Zebrafish DNA sequence from clone CH211-281E15 in linkage group 14,
              complete sequence
          Length = 169694

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 12     tttattacatgcttatttatat 33
              ||||||||||||||||||||||
Sbjct: 151713 tttattacatgcttatttatat 151692

>emb|BX284110.16| Zebrafish DNA sequence from clone DKEYP-67D7 in linkage group 10,
             complete sequence
          Length = 179798

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 12    tttattacatgcttatttatat 33
             ||||||||||||||||||||||
Sbjct: 58168 tttattacatgcttatttatat 58189

>emb|AL935277.6| Zebrafish DNA sequence from clone CH211-250C16, complete sequence
          Length = 69315

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 12    tttattacatgcttatttatat 33
             ||||||||||||||||||||||
Sbjct: 48453 tttattacatgcttatttatat 48474

>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 150     tacccttcgtgtaatccacat 170
               |||||||||||||||||||||
Sbjct: 2851603 tacccttcgtgtaatccacat 2851623

>gb|AC109276.12| Mus musculus chromosome 1, clone RP23-461J11, complete sequence
          Length = 173589

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   aggggctggggttttatgatt 229
             |||||||||||||||||||||
Sbjct: 47452 aggggctggggttttatgatt 47472

>ref|XM_954818.1| Neurospora crassa OR74A hypothetical protein (NCU02267.1) partial
           mRNA
          Length = 1821

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 256 ggcaacaaggccacccgcaag 276
           |||||||||||||||||||||
Sbjct: 183 ggcaacaaggccacccgcaag 163

>ref|XM_331042.1| Neurospora crassa OR74A hypothetical protein (NCU02267.1) partial
           mRNA
          Length = 1821

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 256 ggcaacaaggccacccgcaag 276
           |||||||||||||||||||||
Sbjct: 183 ggcaacaaggccacccgcaag 163

>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 150     tacccttcgtgtaatccacat 170
               |||||||||||||||||||||
Sbjct: 3161371 tacccttcgtgtaatccacat 3161391

>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 150     tacccttcgtgtaatccacat 170
               |||||||||||||||||||||
Sbjct: 3040344 tacccttcgtgtaatccacat 3040364

>emb|BX908789.1| Neurospora crassa DNA linkage group VII BAC clone B13D24
          Length = 107482

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 256   ggcaacaaggccacccgcaag 276
             |||||||||||||||||||||
Sbjct: 43798 ggcaacaaggccacccgcaag 43778

>gb|AC107965.4| Homo sapiens chromosome 8, clone CTD-2332A4, complete sequence
          Length = 112032

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 13    ttattacatgcttatttatat 33
             |||||||||||||||||||||
Sbjct: 35046 ttattacatgcttatttatat 35066

>gb|AC021760.9| Homo sapiens chromosome 8, clone RP11-433L7, complete sequence
          Length = 183059

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 13   ttattacatgcttatttatat 33
            |||||||||||||||||||||
Sbjct: 3429 ttattacatgcttatttatat 3409

>emb|BX284616.13| Zebrafish DNA sequence from clone DKEY-192I20 in linkage group 19,
             complete sequence
          Length = 223573

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 12    tttattacatgcttatttatatcca 36
             |||||||||||| ||||||||||||
Sbjct: 51607 tttattacatgcatatttatatcca 51631

>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 150     tacccttcgtgtaatccacat 170
               |||||||||||||||||||||
Sbjct: 2846307 tacccttcgtgtaatccacat 2846327

>gb|DQ011154.1| Monkeypox virus strain Congo_2003_358, complete genome
          Length = 197195

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 162   aatccacatctaaagaaaaatgat 185
             |||| |||||||||||||||||||
Sbjct: 33380 aatcaacatctaaagaaaaatgat 33403

>emb|AL590675.3| Human DNA sequence from clone RP11-297O16 on chromosome 6, complete
             sequence
          Length = 48306

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     aaataaccttttattacatgctta 26
             |||||||||||||||| |||||||
Sbjct: 18561 aaataaccttttattaaatgctta 18584

>gb|AF438327.1| Homo sapiens alpha 1 type XXI collagen precursor (COL21A1) gene, complete
              cds, alternatively spliced
          Length = 381696

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 3      aaataaccttttattacatgctta 26
              |||||||||||||||| |||||||
Sbjct: 106905 aaataaccttttattaaatgctta 106882

>gb|AC020593.6| Homo sapiens BAC clone RP11-317G22 from 4, complete sequence
          Length = 184206

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    acatctaaagaaaaatgatg 186
              ||||||||||||||||||||
Sbjct: 163750 acatctaaagaaaaatgatg 163731

>gb|AC127684.5| Mus musculus BAC clone RP24-171J12 from chromosome 6, complete sequence
          Length = 178299

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   acatctaaagaaaaatgatg 186
             ||||||||||||||||||||
Sbjct: 26172 acatctaaagaaaaatgatg 26191

>emb|BX548072.14| Zebrafish DNA sequence from clone DKEYP-84A8 in linkage group 22,
             complete sequence
          Length = 188936

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tttattacatgcttatttat 31
             ||||||||||||||||||||
Sbjct: 84180 tttattacatgcttatttat 84199

>gb|AC156277.6| Mus musculus 6 BAC RP24-309B5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 152539

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    acatctaaagaaaaatgatg 186
              ||||||||||||||||||||
Sbjct: 127355 acatctaaagaaaaatgatg 127374


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,750,388
Number of Sequences: 3902068
Number of extensions: 2750388
Number of successful extensions: 47169
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47053
Number of HSP's gapped (non-prelim): 116
length of query: 291
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 269
effective length of database: 17,147,199,772
effective search space: 4612596738668
effective search space used: 4612596738668
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)