Clone Name | rbastl17c03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 63.9 bits (32), Expect = 8e-08 Identities = 84/98 (85%), Gaps = 5/98 (5%) Strand = Plus / Plus Query: 7 tacaagataatatacac--tctacataaaaaaccatatggaatggcgaccaccaatccct 64 ||||||||||||||||| ||||||| |||| ||||||| |||||| ||| ||||| ||| Sbjct: 23202972 tacaagataatatacacactctacatcaaaa-ccatatgaaatggcaacctccaattcct 23203030 Query: 65 tgaagcgaccaat--gcatgcacaaatgaactccccca 100 |||||| | |||| |||| ||||||||||||| |||| Sbjct: 23203031 tgaagccagcaatgcgcattcacaaatgaactcaccca 23203068
>dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1562_B11 Length = 112144 Score = 63.9 bits (32), Expect = 8e-08 Identities = 84/98 (85%), Gaps = 5/98 (5%) Strand = Plus / Plus Query: 7 tacaagataatatacac--tctacataaaaaaccatatggaatggcgaccaccaatccct 64 ||||||||||||||||| ||||||| |||| ||||||| |||||| ||| ||||| ||| Sbjct: 65886 tacaagataatatacacactctacatcaaaa-ccatatgaaatggcaacctccaattcct 65944 Query: 65 tgaagcgaccaat--gcatgcacaaatgaactccccca 100 |||||| | |||| |||| ||||||||||||| |||| Sbjct: 65945 tgaagccagcaatgcgcattcacaaatgaactcaccca 65982
>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1699_E05 Length = 170666 Score = 63.9 bits (32), Expect = 8e-08 Identities = 84/98 (85%), Gaps = 5/98 (5%) Strand = Plus / Plus Query: 7 tacaagataatatacac--tctacataaaaaaccatatggaatggcgaccaccaatccct 64 ||||||||||||||||| ||||||| |||| ||||||| |||||| ||| ||||| ||| Sbjct: 147156 tacaagataatatacacactctacatcaaaa-ccatatgaaatggcaacctccaattcct 147214 Query: 65 tgaagcgaccaat--gcatgcacaaatgaactccccca 100 |||||| | |||| |||| ||||||||||||| |||| Sbjct: 147215 tgaagccagcaatgcgcattcacaaatgaactcaccca 147252
>gb|AC159127.8| Mus musculus chromosome 3, clone RP24-214E8, complete sequence Length = 195609 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 ttgaatacaagataatatac 21 |||||||||||||||||||| Sbjct: 66803 ttgaatacaagataatatac 66822
>gb|AC107368.11| Mus musculus chromosome 3, clone RP23-243N8, complete sequence Length = 253744 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 ttgaatacaagataatatac 21 |||||||||||||||||||| Sbjct: 246296 ttgaatacaagataatatac 246315
>emb|AL079342.17|HSDJ72A23 Human DNA sequence from clone RP1-72A23 on chromosome 6 Contains an adaptor-related (clathrin-associated) protein complex 4, sigma 1 subunit (AP4A1) pseudogene, a novel pseudogene, the 5' end of the RNGTT gene for RNA guanylyltransferase and 5'-phosphatase (mRNA capping enzyme, CAP1A) and two CpG islands, complete sequence Length = 150541 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 gaatacaagataatatacac 23 |||||||||||||||||||| Sbjct: 51067 gaatacaagataatatacac 51048
>gb|AY649844.2| Schistosoma mansoni insulin receptor tyrosine kinase 3 (RTK-3) mRNA, complete cds Length = 5521 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 caatcccttgaagcgaccaa 76 |||||||||||||||||||| Sbjct: 4758 caatcccttgaagcgaccaa 4777
>emb|AL358338.3|CNS05TE9 Human chromosome 14 DNA sequence BAC C-2082C19 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 138225 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ataatatacactctacataa 32 |||||||||||||||||||| Sbjct: 29424 ataatatacactctacataa 29443
>gb|AC146459.3| Pan troglodytes BAC clone CH251-229E22 from Y, complete sequence Length = 191428 Score = 38.2 bits (19), Expect = 4.4 Identities = 25/27 (92%) Strand = Plus / Minus Query: 7 tacaagataatatacactctacataaa 33 ||||| |||| |||||||||||||||| Sbjct: 29579 tacaaaataaaatacactctacataaa 29553
>gb|AC147477.1| Pan troglodytes BAC clone CH251-483E9 from Y, complete sequence Length = 213500 Score = 38.2 bits (19), Expect = 4.4 Identities = 25/27 (92%) Strand = Plus / Minus Query: 7 tacaagataatatacactctacataaa 33 ||||| |||| |||||||||||||||| Sbjct: 177042 tacaaaataaaatacactctacataaa 177016
>emb|AL953885.10| Human DNA sequence from clone XXyac-809E11 on chromosome X, complete sequence Length = 46132 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 ataatatacactctacata 31 ||||||||||||||||||| Sbjct: 36036 ataatatacactctacata 36018
>emb|AL359258.23| Human DNA sequence from clone RP11-483I13 on chromosome 1 Contains the 5' end of the SLC25A24 gene for solute carrier family 25 (mitochondrial carrier; phosphate carrier) member 24, the gene for a novel protein, two novel genes, a pseudogene similar to solute carrier family 25 (mitochondrial carrier; phosphate carrier) member 24 (SLC25A24) and two CpG islands, complete sequence Length = 188622 Score = 38.2 bits (19), Expect = 4.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 13 ataatatacactctacataaaaa 35 |||||||| |||||||||||||| Sbjct: 18803 ataatataaactctacataaaaa 18825
>dbj|BS000618.1| Pan troglodytes chromosome Y clone:PTB-428B15, complete sequences Length = 103410 Score = 38.2 bits (19), Expect = 4.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 7 tacaagataatatacactctacataaa 33 ||||| |||| |||||||||||||||| Sbjct: 10209 tacaaaataaaatacactctacataaa 10235
>dbj|BS000617.1| Pan troglodytes chromosome Y clone:PTB-206A19, complete sequences Length = 169081 Score = 38.2 bits (19), Expect = 4.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 7 tacaagataatatacactctacataaa 33 ||||| |||| |||||||||||||||| Sbjct: 153139 tacaaaataaaatacactctacataaa 153165
>gb|AC114975.2| Homo sapiens chromosome 5 clone RP11-484L7, complete sequence Length = 197363 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 atacactctacataaaaaa 36 ||||||||||||||||||| Sbjct: 116754 atacactctacataaaaaa 116772
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 38.2 bits (19), Expect = 4.4 Identities = 25/27 (92%) Strand = Plus / Minus Query: 7 tacaagataatatacactctacataaa 33 ||||| |||| |||||||||||||||| Sbjct: 14934043 tacaaaataaaatacactctacataaa 14934017
>gb|AC127170.11| Medicago truncatula clone mth2-35d10, complete sequence Length = 114143 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 agataatatacactctaca 29 ||||||||||||||||||| Sbjct: 14295 agataatatacactctaca 14313
>gb|AC109480.3| Homo sapiens chromosome 5 clone RP11-455B3, complete sequence Length = 191923 Score = 38.2 bits (19), Expect = 4.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 1 tttgaatacaagataatatacac 23 ||||||||||| ||||||||||| Sbjct: 125541 tttgaatacaaaataatatacac 125519
>gb|AC160012.1| Medicago truncatula chromosome 2 BAC clone mth2-168l8, complete sequence Length = 145061 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 agataatatacactctaca 29 ||||||||||||||||||| Sbjct: 67122 agataatatacactctaca 67140
>gb|AC009494.2|AC009494 Homo sapiens BAC clone RP11-450B24 from Y, complete sequence Length = 188314 Score = 38.2 bits (19), Expect = 4.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 7 tacaagataatatacactctacataaa 33 ||||| |||| |||||||||||||||| Sbjct: 133178 tacaaaataaaatacactctacataaa 133204
>emb|AL357752.19| Human DNA sequence from clone RP13-26D14 on chromosome Xq13.2-21.1 Contains the 5' end of the KIF4A gene for kinesin family member 4A, gene FLJ21093, a novel gene, the ARR3 gene for arrestin 3, retinal (x-arrestin), the P2RY4 gene for pyrimidinergic receptor P2Y, G-protein coupled, 4, the gene for a novel protein similar to diacylglycerol O-acyltransferase 2 like 1 (DGAT2L1), a novel pseudogene, the 3' end of the gene for a novel protein similar to diacylglycerol O-acyltransferase homolog 2 (mouse) (DGAT2) and two CpG islands, complete sequence Length = 178868 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 aatacaagataatatacac 23 ||||||||||||||||||| Sbjct: 160367 aatacaagataatatacac 160349
>gb|AC138329.4| Mus musculus BAC clone RP23-227L14 from 13, complete sequence Length = 240321 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 aaaaaaccatatggaatgg 49 ||||||||||||||||||| Sbjct: 125685 aaaaaaccatatggaatgg 125667 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 881,265 Number of Sequences: 3902068 Number of extensions: 881265 Number of successful extensions: 57384 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57306 Number of HSP's gapped (non-prelim): 72 length of query: 100 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 79 effective length of database: 17,151,101,840 effective search space: 1354937045360 effective search space used: 1354937045360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)