ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 64 8e-08
2dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic D... 64 8e-08
3dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic D... 64 8e-08
4gb|AC159127.8| Mus musculus chromosome 3, clone RP24-214E8, comp... 40 1.1
5gb|AC107368.11| Mus musculus chromosome 3, clone RP23-243N8, com... 40 1.1
6emb|AL079342.17|HSDJ72A23 Human DNA sequence from clone RP1-72A2... 40 1.1
7gb|AY649844.2| Schistosoma mansoni insulin receptor tyrosine kin... 40 1.1
8emb|AL358338.3|CNS05TE9 Human chromosome 14 DNA sequence BAC C-2... 40 1.1
9gb|AC146459.3| Pan troglodytes BAC clone CH251-229E22 from Y, co... 38 4.4
10gb|AC147477.1| Pan troglodytes BAC clone CH251-483E9 from Y, com... 38 4.4
11emb|AL953885.10| Human DNA sequence from clone XXyac-809E11 on c... 38 4.4
12emb|AL359258.23| Human DNA sequence from clone RP11-483I13 on ch... 38 4.4
13dbj|BS000618.1| Pan troglodytes chromosome Y clone:PTB-428B15, c... 38 4.4
14dbj|BS000617.1| Pan troglodytes chromosome Y clone:PTB-206A19, c... 38 4.4
15gb|AC114975.2| Homo sapiens chromosome 5 clone RP11-484L7, compl... 38 4.4
16gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 38 4.4
17gb|AC127170.11| Medicago truncatula clone mth2-35d10, complete s... 38 4.4
18gb|AC109480.3| Homo sapiens chromosome 5 clone RP11-455B3, compl... 38 4.4
19gb|AC160012.1| Medicago truncatula chromosome 2 BAC clone mth2-1... 38 4.4
20gb|AC009494.2|AC009494 Homo sapiens BAC clone RP11-450B24 from Y... 38 4.4
21emb|AL357752.19| Human DNA sequence from clone RP13-26D14 on chr... 38 4.4
22gb|AC138329.4| Mus musculus BAC clone RP23-227L14 from 13, compl... 38 4.4

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 63.9 bits (32), Expect = 8e-08
 Identities = 84/98 (85%), Gaps = 5/98 (5%)
 Strand = Plus / Plus

                                                                            
Query: 7        tacaagataatatacac--tctacataaaaaaccatatggaatggcgaccaccaatccct 64
                |||||||||||||||||  ||||||| |||| ||||||| |||||| ||| ||||| |||
Sbjct: 23202972 tacaagataatatacacactctacatcaaaa-ccatatgaaatggcaacctccaattcct 23203030

                                                      
Query: 65       tgaagcgaccaat--gcatgcacaaatgaactccccca 100
                |||||| | ||||  |||| ||||||||||||| ||||
Sbjct: 23203031 tgaagccagcaatgcgcattcacaaatgaactcaccca 23203068



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>dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1562_B11
          Length = 112144

 Score = 63.9 bits (32), Expect = 8e-08
 Identities = 84/98 (85%), Gaps = 5/98 (5%)
 Strand = Plus / Plus

                                                                         
Query: 7     tacaagataatatacac--tctacataaaaaaccatatggaatggcgaccaccaatccct 64
             |||||||||||||||||  ||||||| |||| ||||||| |||||| ||| ||||| |||
Sbjct: 65886 tacaagataatatacacactctacatcaaaa-ccatatgaaatggcaacctccaattcct 65944

                                                   
Query: 65    tgaagcgaccaat--gcatgcacaaatgaactccccca 100
             |||||| | ||||  |||| ||||||||||||| ||||
Sbjct: 65945 tgaagccagcaatgcgcattcacaaatgaactcaccca 65982



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>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1699_E05
          Length = 170666

 Score = 63.9 bits (32), Expect = 8e-08
 Identities = 84/98 (85%), Gaps = 5/98 (5%)
 Strand = Plus / Plus

                                                                          
Query: 7      tacaagataatatacac--tctacataaaaaaccatatggaatggcgaccaccaatccct 64
              |||||||||||||||||  ||||||| |||| ||||||| |||||| ||| ||||| |||
Sbjct: 147156 tacaagataatatacacactctacatcaaaa-ccatatgaaatggcaacctccaattcct 147214

                                                    
Query: 65     tgaagcgaccaat--gcatgcacaaatgaactccccca 100
              |||||| | ||||  |||| ||||||||||||| ||||
Sbjct: 147215 tgaagccagcaatgcgcattcacaaatgaactcaccca 147252



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>gb|AC159127.8| Mus musculus chromosome 3, clone RP24-214E8, complete sequence
          Length = 195609

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     ttgaatacaagataatatac 21
             ||||||||||||||||||||
Sbjct: 66803 ttgaatacaagataatatac 66822



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>gb|AC107368.11| Mus musculus chromosome 3, clone RP23-243N8, complete sequence
          Length = 253744

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      ttgaatacaagataatatac 21
              ||||||||||||||||||||
Sbjct: 246296 ttgaatacaagataatatac 246315



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>emb|AL079342.17|HSDJ72A23 Human DNA sequence from clone RP1-72A23 on chromosome 6 Contains an
             adaptor-related (clathrin-associated) protein complex 4,
             sigma 1 subunit (AP4A1) pseudogene, a novel pseudogene,
             the 5' end of the RNGTT gene for RNA guanylyltransferase
             and 5'-phosphatase (mRNA capping enzyme, CAP1A) and two
             CpG islands, complete sequence
          Length = 150541

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     gaatacaagataatatacac 23
             ||||||||||||||||||||
Sbjct: 51067 gaatacaagataatatacac 51048



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>gb|AY649844.2| Schistosoma mansoni insulin receptor tyrosine kinase 3 (RTK-3) mRNA,
            complete cds
          Length = 5521

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 57   caatcccttgaagcgaccaa 76
            ||||||||||||||||||||
Sbjct: 4758 caatcccttgaagcgaccaa 4777



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>emb|AL358338.3|CNS05TE9 Human chromosome 14 DNA sequence BAC C-2082C19 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 138225

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    ataatatacactctacataa 32
             ||||||||||||||||||||
Sbjct: 29424 ataatatacactctacataa 29443



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>gb|AC146459.3| Pan troglodytes BAC clone CH251-229E22 from Y, complete sequence
          Length = 191428

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 7     tacaagataatatacactctacataaa 33
             ||||| |||| ||||||||||||||||
Sbjct: 29579 tacaaaataaaatacactctacataaa 29553



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>gb|AC147477.1| Pan troglodytes BAC clone CH251-483E9 from Y, complete sequence
          Length = 213500

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 7      tacaagataatatacactctacataaa 33
              ||||| |||| ||||||||||||||||
Sbjct: 177042 tacaaaataaaatacactctacataaa 177016



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>emb|AL953885.10| Human DNA sequence from clone XXyac-809E11 on chromosome X, complete
             sequence
          Length = 46132

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    ataatatacactctacata 31
             |||||||||||||||||||
Sbjct: 36036 ataatatacactctacata 36018



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>emb|AL359258.23| Human DNA sequence from clone RP11-483I13 on chromosome 1 Contains the
             5' end of the SLC25A24 gene for solute carrier family 25
             (mitochondrial carrier; phosphate carrier) member 24, the
             gene for a novel protein, two novel genes, a pseudogene
             similar to solute carrier family 25 (mitochondrial
             carrier; phosphate carrier) member 24 (SLC25A24) and two
             CpG islands, complete sequence
          Length = 188622

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 13    ataatatacactctacataaaaa 35
             |||||||| ||||||||||||||
Sbjct: 18803 ataatataaactctacataaaaa 18825



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>dbj|BS000618.1| Pan troglodytes chromosome Y clone:PTB-428B15, complete sequences
          Length = 103410

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 7     tacaagataatatacactctacataaa 33
             ||||| |||| ||||||||||||||||
Sbjct: 10209 tacaaaataaaatacactctacataaa 10235



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>dbj|BS000617.1| Pan troglodytes chromosome Y clone:PTB-206A19, complete sequences
          Length = 169081

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 7      tacaagataatatacactctacataaa 33
              ||||| |||| ||||||||||||||||
Sbjct: 153139 tacaaaataaaatacactctacataaa 153165



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>gb|AC114975.2| Homo sapiens chromosome 5 clone RP11-484L7, complete sequence
          Length = 197363

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 18     atacactctacataaaaaa 36
              |||||||||||||||||||
Sbjct: 116754 atacactctacataaaaaa 116772



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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                           
Query: 7        tacaagataatatacactctacataaa 33
                ||||| |||| ||||||||||||||||
Sbjct: 14934043 tacaaaataaaatacactctacataaa 14934017



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>gb|AC127170.11| Medicago truncatula clone mth2-35d10, complete sequence
          Length = 114143

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    agataatatacactctaca 29
             |||||||||||||||||||
Sbjct: 14295 agataatatacactctaca 14313



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>gb|AC109480.3| Homo sapiens chromosome 5 clone RP11-455B3, complete sequence
          Length = 191923

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 1      tttgaatacaagataatatacac 23
              ||||||||||| |||||||||||
Sbjct: 125541 tttgaatacaaaataatatacac 125519



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>gb|AC160012.1| Medicago truncatula chromosome 2 BAC clone mth2-168l8, complete
             sequence
          Length = 145061

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    agataatatacactctaca 29
             |||||||||||||||||||
Sbjct: 67122 agataatatacactctaca 67140



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>gb|AC009494.2|AC009494 Homo sapiens BAC clone RP11-450B24 from Y, complete sequence
          Length = 188314

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 7      tacaagataatatacactctacataaa 33
              ||||| |||| ||||||||||||||||
Sbjct: 133178 tacaaaataaaatacactctacataaa 133204



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>emb|AL357752.19| Human DNA sequence from clone RP13-26D14 on chromosome Xq13.2-21.1
              Contains the 5' end of the KIF4A gene for kinesin family
              member 4A, gene FLJ21093, a novel gene, the ARR3 gene for
              arrestin 3, retinal (x-arrestin), the P2RY4 gene for
              pyrimidinergic receptor P2Y, G-protein coupled, 4, the gene
              for a novel protein similar to diacylglycerol
              O-acyltransferase 2 like 1 (DGAT2L1), a novel pseudogene,
              the 3' end of the gene for a novel protein similar to
              diacylglycerol O-acyltransferase homolog 2 (mouse) (DGAT2)
              and two CpG islands, complete sequence
          Length = 178868

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      aatacaagataatatacac 23
              |||||||||||||||||||
Sbjct: 160367 aatacaagataatatacac 160349



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>gb|AC138329.4| Mus musculus BAC clone RP23-227L14 from 13, complete sequence
          Length = 240321

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 31     aaaaaaccatatggaatgg 49
              |||||||||||||||||||
Sbjct: 125685 aaaaaaccatatggaatgg 125667


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 881,265
Number of Sequences: 3902068
Number of extensions: 881265
Number of successful extensions: 57384
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57306
Number of HSP's gapped (non-prelim): 72
length of query: 100
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 79
effective length of database: 17,151,101,840
effective search space: 1354937045360
effective search space used: 1354937045360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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