>CHMP7_BRARE (Q6PBQ2) Protein CHMP7|
          Length = 457

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 7/50 (14%)
 Frame = -3

Query: 389 QTERSQLEEQIKA-----EKLK--ALTLKREGKQAEALEALRSAKRPEKK 261
           Q     LEE+++A     EK K  A +L +EGK+++AL  LR +KR EKK
Sbjct: 236 QCSEKLLEERVEALGHEAEKCKQQAKSLLKEGKKSQALRCLRGSKRVEKK 285

>NFL_HUMAN (P07196) Neurofilament triplet L protein (68 kDa neurofilament|
           protein) (Neurofilament light polypeptide) (NF-L)
          Length = 542

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -3

Query: 443 QPPVKAEARPTVAATSKAQTERSQLEEQIKAEKLKALTLKREGKQAEALEALRSAKRPEK 264
           +PP + EA        +A+ E +  EE+   E+ +    + EG + E  E  + A+  EK
Sbjct: 468 EPPSEGEAEEEEKDKEEAEEEEAAEEEEAAKEESEEAKEEEEGGEGEEGEETKEAEEEEK 527

Query: 263 KL 258
           K+
Sbjct: 528 KV 529

>REN3B_HUMAN (Q9BZI7) Regulator of nonsense transcripts 3B (Nonsense mRNA|
           reducing factor 3B) (Up-frameshift suppressor 3 homolog
           B) (hUpf3B) (hUpf3p-X)
          Length = 483

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 16/36 (44%), Positives = 27/36 (75%)
 Frame = -3

Query: 368 EEQIKAEKLKALTLKREGKQAEALEALRSAKRPEKK 261
           EE++K EK    TL+ +GK+AE+ E++ S+++ EKK
Sbjct: 390 EEEMKKEKD---TLRDKGKKAESTESIGSSEKTEKK 422

>SYS_THEMA (Q9X199) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 425

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 16/62 (25%), Positives = 34/62 (54%)
 Frame = -3

Query: 434 VKAEARPTVAATSKAQTERSQLEEQIKAEKLKALTLKREGKQAEALEALRSAKRPEKKLA 255
           + A+ R T+  T++ ++ R+++ + +         LK+EGK AEA   +   KR  +++ 
Sbjct: 34  IDADWRATITKTNELRSRRNEISKNVAR-------LKKEGKNAEAEALIEEGKRLGEEIK 86

Query: 254 SL 249
           +L
Sbjct: 87  AL 88

>MAP1B_RAT (P15205) Microtubule-associated protein 1B (MAP 1B) (Neuraxin)|
           [Contains: MAP1 light chain LC1]
          Length = 2459

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = -3

Query: 443 QPPVKAEARPTVAATSKAQTERSQLEEQIKAEKLKALTLKREGKQAEALEALRSAKRPEK 264
           + P K EA+  +    K + E+ +L++++K E       K+E K+ E  E  +  K P+K
Sbjct: 670 EKPKKEEAKKEIKKEIKKE-EKKELKKEVKKET-PLKDAKKEVKKDEKKEVKKEEKEPKK 727

Query: 263 KLASLS 246
           ++  +S
Sbjct: 728 EIKKIS 733

>Y5G8_ENCCU (Q8STA9) Hypothetical protein ECU05_1680/ECU11_0050|
          Length = 612

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -3

Query: 395 KAQTERSQLEEQIKAEKLKALTLKREGKQAEALEALRSAKRPEKK 261
           K + E+ + +E+ K EK K    K+E K+ E  E  +  K+ EKK
Sbjct: 328 KRKEEKKKKKEEKKEEKKKKKEEKKEEKKEEKKEEKKEEKKEEKK 372

>YNP1_CAEEL (P34554) Hypothetical protein T05G5.1 precursor|
          Length = 411

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -3

Query: 389 QTERSQLEEQIKAEKLKALTLKREGKQAEALEALRSAKRPEKKL 258
           + ERSQ+EE+ + E+ + L  +RE  +A   +  R  +  EK++
Sbjct: 178 EAERSQIEERRREEESRRLAAQRETDEARVRDEERRRQETEKEV 221

>MAP1B_MOUSE (P14873) Microtubule-associated protein 1B (MAP 1B) (MAP1.2)|
           (MAP1(X)) [Contains: MAP1 light chain LC1]
          Length = 2464

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/66 (27%), Positives = 34/66 (51%)
 Frame = -3

Query: 443 QPPVKAEARPTVAATSKAQTERSQLEEQIKAEKLKALTLKREGKQAEALEALRSAKRPEK 264
           + P K E +  +    K + ER +L++++K E       K+E K+ E  E  +  K P+K
Sbjct: 671 EKPRKEEVKKEIKKEIKKE-ERKELKKEVKKET-PLKDAKKEVKKEEKKEVKKEEKEPKK 728

Query: 263 KLASLS 246
           ++  +S
Sbjct: 729 EIKKIS 734

>MMRN2_HUMAN (Q9H8L6) Multimerin-2 precursor (EMILIN-3) (Elastin microfibril|
           interface located protein 3) (Elastin microfibril
           interfacer 3) (EndoGlyx-1 p125/p140 subunit)
          Length = 949

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -3

Query: 431 KAEARPTVAATSKAQTERSQLEEQIKAEKLKALTLKREGKQAEALEA--LRSAKRPEKKL 258
           KAE     AATS+ +++   L++++ A K  A   + E +Q  +  A  L  A R E  L
Sbjct: 551 KAEGERARAATSRLRSQVQALDDEVGALKAAAAEARHEVRQLHSAFAALLEDALRHEAVL 610

Query: 257 ASL 249
           A+L
Sbjct: 611 AAL 613

>PIT1_ONCMY (Q08478) Pituitary-specific positive transcription factor 1 (Pit-1)|
           (Growth hormone factor 1) (GHF-1)
          Length = 358

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +2

Query: 17  LLWSHQN--NCCPSNFSCYIFTYTHDQRCCAPGSQVISL*PSATNSDMHYSITSLLDKLS 190
           LL  H +  +C PS+ S    T+TH+     P    +SL  S+  S MH S ++L + LS
Sbjct: 21  LLMHHASAADCLPSSAS----THTHNMVSAVPSG--LSLLQSSKRSHMHLSTSTLGNALS 74

Query: 191 SG 196
           +G
Sbjct: 75  NG 76

>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)|
          Length = 4684

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -3

Query: 404  ATSKAQTERSQLEEQIKAEKLKALTLKREGKQAEALEALRSAKR 273
            A   AQ ERS  EE +   +L+    +R  +QAEA  A   A+R
Sbjct: 1723 AEKTAQLERSLQEEHVAVAQLREEAERRAQQQAEAERAREEAER 1766

>BAZ1A_HUMAN (Q9NRL2) Bromodomain adjacent to zinc finger domain protein 1A|
           (ATP-utilizing chromatin assembly and remodeling factor
           1) (hACF1) (ATP-dependent chromatin remodelling protein)
           (Williams syndrome transcription factor-related
           chromatin remodeli
          Length = 1556

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = -3

Query: 398 SKAQTERSQL--EEQIKAEKLKALTLKREGKQAEALEALRSAKRPEKK 261
           SKA  ER +L  +E++K+   +   LKRE  +A+ALEA +  K  ++K
Sbjct: 302 SKATKERDKLLKQEEMKSLAFEKAKLKRE--KADALEAKKKEKEDKEK 347

>LIPA1_HUMAN (Q13136) Liprin-alpha-1 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein alpha-1)
           (PTPRF-interacting protein alpha-1) (LAR-interacting
           protein 1) (LIP.1)
          Length = 1202

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -3

Query: 440 PPVKAEARPTVAATSKAQTERSQLEEQIKAEKLKALTLKREGKQAEALEALRSAKRPEKK 261
           P V+AE    VAA SKA+     +E     E+L+ +  + E K  E   A +  K  E+ 
Sbjct: 389 PEVEAELAQRVAALSKAEERHGNIE-----ERLRQMEAQLEEKNQELQRARQREKMNEEH 443

Query: 260 LASLS 246
              LS
Sbjct: 444 NKRLS 448

>PEPL_HUMAN (O60437) Periplakin (195 kDa cornified envelope precursor protein)|
           (190 kDa paraneoplastic pemphigus antigen)
          Length = 1756

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -3

Query: 431 KAEARPTVAATSKAQTERSQLEEQIK--AEKLKALTLKREGKQAEALEALRSAKRPEKKL 258
           K +  PTV   S +  E S+L EQ++  A++++   +  E K    L  L+  ++PE + 
Sbjct: 10  KGKYSPTVQTRSISNKELSELIEQLQKNADQVEKNIVDTEAKMQSDLARLQEGRQPEHRD 69

Query: 257 ASL 249
            +L
Sbjct: 70  VTL 72

>PZRN4_HUMAN (Q6ZMN7) PDZ domain-containing RING finger protein 4 (Ligand of|
           Numb-protein X 4) (SEMACAP3-like protein)
          Length = 1036

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -3

Query: 431 KAEARPTVAATSKAQTERSQLEEQIKAEKLKALTLKREGKQAEALE-ALRSAKRPEKKLA 255
           K   R T+AAT  +  + S+     KA+  +      +G  AE+ E  L  +K P+++ A
Sbjct: 769 KKNLRSTMAATQSSSGQSSKESTSTKAKTTE------QGCSAESKEKVLEGSKLPDQEKA 822

Query: 254 SLS*VPHHLPYLT 216
               V  H+PYL+
Sbjct: 823 ----VSEHIPYLS 831

>DDX54_MOUSE (Q8K4L0) ATP-dependent RNA helicase DDX54 (EC 3.6.1.-) (DEAD box|
           protein 54)
          Length = 874

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 377 SQLEEQIKAEKLKALTLKREGKQAEALEALRSAKRPEKKLASLS*VPHHLPYLT-FLFGK 201
           S+L EQ+K      L ++ + K A  L  L++  RP+ +        HH  YLT  L G+
Sbjct: 304 SKLNEQLKTS---FLLVREDTKAAVLLYLLQNVVRPQDQTVVFVATKHHAEYLTELLMGQ 360

Query: 200 SI 195
            +
Sbjct: 361 GV 362


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,528,786
Number of Sequences: 219361
Number of extensions: 772411
Number of successful extensions: 2458
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2449
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)